View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6002_low_1 (Length: 908)
Name: NF6002_low_1
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6002_low_1 |
 | |
|
| [»] scaffold0449 (1 HSPs) |
| | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 859; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 18 - 895
Target Start/End: Complemental strand, 50831886 - 50831008
Alignment:
| Q |
18 |
aatatactaatcatatttaaagggggttattggttataataagaagcactgcttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831886 |
aatatactaatcatatttaaagggggttattggttataataagaagcactgcttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcagg |
50831787 |
T |
|
| Q |
118 |
tttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatcccctatattttagttgattgcaggacgttaaaatgcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831786 |
tttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatcccctatattttagttgattgcaggacgttaaaatgcg |
50831687 |
T |
|
| Q |
218 |
ggactatgttcaatattctatacaattcatctggattttacattgcaaatttctacactattttatttatggtgtttgtgatgcaggattttacattgca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831686 |
ggactatgttcaatattctatacaattcatctggattttacattgcaaatttctacactattttatttatggtgtttgtgatgcaggattttacattgca |
50831587 |
T |
|
| Q |
318 |
aattaaatggaagctttgataagattctaaatgtgtgcatgttaagatggttttgttttcaatattgtaactgcattaagctattttttaatcgacacgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831586 |
aattaaatggaagctttgataagattctaaatgtgtgcatgttaagatggttttgttttcaatattgtaactgcattaagctattttttaatcgacacgt |
50831487 |
T |
|
| Q |
418 |
ttgataggtttgaagaatcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgtttatgattaatgtggatcaatgttaataatatgatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50831486 |
ttgataggtttgaagaatcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgtttatgattaatgtggatcaatgttaataatatgact |
50831387 |
T |
|
| Q |
518 |
tagtttataacaatcttttagtgtgaaatgtcatattactggttgttagacatgatattagctgcacattgttggatgtgtgtattatgtatgatattat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831386 |
tagtttataacaatcttttagtgtgaaatgtcatattactggttgttagacatgatattacctgcacattgttggatgtgtgtattatgtatgatattat |
50831287 |
T |
|
| Q |
618 |
atttttaattatttctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttga |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831286 |
atttttaattatttctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttga |
50831187 |
T |
|
| Q |
718 |
accggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaattgcacatgcggtt |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50831186 |
accggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaagtgcacatgcggtt |
50831087 |
T |
|
| Q |
818 |
taccaa-aaaatacaggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
895 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50831086 |
taccaaaaaaatacaggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
50831008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 18 - 895
Target Start/End: Original strand, 50843967 - 50844845
Alignment:
| Q |
18 |
aatatactaatcatatttaaagggggttattggttataataagaagcactgcttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50843967 |
aatatactaatcatatttaaagggggttattggttataataagaagcactgcttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcagg |
50844066 |
T |
|
| Q |
118 |
tttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatcccctatattttagttgattgcaggacgttaaaatgcg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844067 |
tttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatcccctatattttagttgattgcaggacgttaaaatgcg |
50844166 |
T |
|
| Q |
218 |
ggactatgttcaatattctatacaattcatctggattttacattgcaaatttctacactattttatttatggtgtttgtgatgcaggattttacattgca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844167 |
ggactatgttcaatattctatacaattcatctggattttacattgcaaatttctacactattttatttatggtgtttgtgatgcaggattttacattgca |
50844266 |
T |
|
| Q |
318 |
aattaaatggaagctttgataagattctaaatgtgtgcatgttaagatggttttgttttcaatattgtaactgcattaagctattttttaatcgacacgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844267 |
aattaaatggaagctttgataagattctaaatgtgtgcatgttaagatggttttgttttcaatattgtaactgcattaagctattttttaatcgacacgt |
50844366 |
T |
|
| Q |
418 |
ttgataggtttgaagaatcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgtttatgattaatgtggatcaatgttaataatatgatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50844367 |
ttgataggtttgaagaatcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgtttatgattaatgtggatcaatgttaataatatgact |
50844466 |
T |
|
| Q |
518 |
tagtttataacaatcttttagtgtgaaatgtcatattactggttgttagacatgatattagctgcacattgttggatgtgtgtattatgtatgatattat |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844467 |
tagtttataacaatcttttagtgtgaaatgtcatattactggttgttagacatgatattacctgcacattgttggatgtgtgtattatgtatgatattat |
50844566 |
T |
|
| Q |
618 |
atttttaattatttctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttga |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844567 |
atttttaattatttctaaatgtttatgccgcacgggtaaacgatctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttga |
50844666 |
T |
|
| Q |
718 |
accggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaattgcacatgcggtt |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50844667 |
accggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccccctcccacaaattctcactaactctgcattaagtgcacatgcggtt |
50844766 |
T |
|
| Q |
818 |
tacc-aaaaaatacaggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
895 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50844767 |
taccaaaaaaatacaggtacaattaatcggtaattaccgagacatgttcttctttcaatatgccaacctctcctctctg |
50844845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 5574796 - 5574318
Alignment:
| Q |
18 |
aatatactaatcatatttaaagggggttattggttataataagaagcactgctttt-gtttgttgaattgtggtttaatgctcaatcttacctcatgcag |
116 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||| |||| ||||||| ||||||||||||||||||| ||||||||| |||| ||||| | |
|
|
| T |
5574796 |
aatatcctaatcatatttaaagggg-ttattgtctataataagtagcattgctttttgtttgttgaattgtggtttcatgctcaattttacatcatgtat |
5574698 |
T |
|
| Q |
117 |
gtttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatcccctat-attttagttgattgcaggacgttaaaatg |
215 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||| | || |||| |||||| |
|
|
| T |
5574697 |
gtttggaagattgtgaaatgcatatatggttaaaatttgaggggatgttattcaacgggtcatcacctattattttagttgatcgtagcacgt-aaaatg |
5574599 |
T |
|
| Q |
216 |
cgggactatgttcaatattctatacaattcatctggattttacattgcaaatttctacactattttatttatggtgtttgtgatgcaggattttacattg |
315 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5574598 |
cgggactatgttcaatcttctatacggttcatttggattttacattccaaattactaccctattttatttatggtatttgtgatgcaggattttacattg |
5574499 |
T |
|
| Q |
316 |
caaattaaatggaagctttgataagattctaaatgt-------gtgcatgttaagatggttttgttttcaatattgtaactgcattaagctattttttaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
5574498 |
caaattaaatggaagctttgataagattctaaacgtccttgaagtgcatgttcggatgattttgtttacaatactgtaactgcattaagctattttttaa |
5574399 |
T |
|
| Q |
409 |
tcgacacgtttgataggtttgaaga-------atcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgtt |
482 |
Q |
| |
|
||| ||| ||||||||||||| | ||| ||||||||| |||| |||||||||| |||||| ||||||||| |
|
|
| T |
5574398 |
aagacccgtgcaataggtttgaagactttggtaccaacgaagatgatgatgagactaatgtaacgtcaaacggtgtatgtt |
5574318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 666 - 771
Target Start/End: Complemental strand, 23217106 - 23217002
Alignment:
| Q |
666 |
tcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttca |
765 |
Q |
| |
|
|||||||||||||| |||| || || |||||| |||||||||||||||| || | ||||| |||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
23217106 |
tcctaatgtacaatgcacagaagacctaaaaa-ccctaatccttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaaatttca |
23217008 |
T |
|
| Q |
766 |
aatccc |
771 |
Q |
| |
|
|||||| |
|
|
| T |
23217007 |
aatccc |
23217002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 644
Target Start/End: Complemental strand, 5574245 - 5574191
Alignment:
| Q |
590 |
tggatgtgtgtattatgtatgatattatatttttaattatttctaaatgtttatg |
644 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||||||| |||||| |
|
|
| T |
5574245 |
tggatgtgtgtattatgtatgattttgtacttttaattatttctaaatttttatg |
5574191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 695 - 769
Target Start/End: Complemental strand, 30766064 - 30765990
Alignment:
| Q |
695 |
aaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatc |
769 |
Q |
| |
|
|||||||||||| |||||| || | ||||| |||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
30766064 |
aaaaccctaatctatgatttagagcgggaaaattttgccttaactacatttgatgtaaaattcgaatttcaaatc |
30765990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 769
Target Start/End: Original strand, 4865129 - 4865238
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
759 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| |||||| | ||||| || || |||||| |||||||||| || || | |
|
|
| T |
4865129 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatggcatttttga |
4865228 |
T |
|
| Q |
760 |
atttcaaatc |
769 |
Q |
| |
|
|||||||||| |
|
|
| T |
4865229 |
atttcaaatc |
4865238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 660 - 769
Target Start/End: Complemental strand, 55041573 - 55041464
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
759 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| ||||| | ||||| || || |||||| |||||||||| || || | |
|
|
| T |
55041573 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggctttgagcgggaaaattgtgatttaaccacatttaatggcatttttga |
55041474 |
T |
|
| Q |
760 |
atttcaaatc |
769 |
Q |
| |
|
|||||||||| |
|
|
| T |
55041473 |
atttcaaatc |
55041464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 6672301 - 6672388
Alignment:
| Q |
70 |
ttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcaggtttggaagattgtgaaatgaagatatgactaaaatttgag |
157 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
6672301 |
ttttgtttgttgaattgtggtttcatgctcaatcttacctcatgcaggtttggaagattgtgaaatgaagatatggcaaaaatttgag |
6672388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 6672459 - 6672570
Alignment:
| Q |
302 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgt-------gtgcatgttaagatggttttgttttcaatattgtaactgcatt |
394 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
6672459 |
aggattttacattgaaaattaaatggaagctttgataagattctaaatgtccttgaggtgcatgttaggatgattttgtttgcaatattgtaactgcatt |
6672558 |
T |
|
| Q |
395 |
aagctatttttt |
406 |
Q |
| |
|
||| |||||||| |
|
|
| T |
6672559 |
aagttatttttt |
6672570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 17468276 - 17468339
Alignment:
| Q |
212 |
aatgcgggactatgttcaatattctatacaattcatctggat-tttacattgcaaatttctaca |
274 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17468276 |
aatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctaca |
17468339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 302 - 408
Target Start/End: Complemental strand, 45240690 - 45240577
Alignment:
| Q |
302 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgt-------gtgcatgttaagatggttttgttttcaatattgtaactgcatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
45240690 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgtccttgaggtgcatgttaggatgattttgtttacaatattgtaactgcatt |
45240591 |
T |
|
| Q |
395 |
aagctattttttaa |
408 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
45240590 |
aagttattttttaa |
45240577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 45240867 - 45240780
Alignment:
| Q |
70 |
ttttgtttgttgaattgtggtttaatgctcaatcttacctcatgcaggtttggaagattgtgaaatgaagatatgactaaaatttgag |
157 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45240867 |
ttttgtttgttgaattgtggtttcatgttcaatcttacctcatgcaggtttggaagattgtgagatgaagatatggctaaaatttgag |
45240780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 42318928 - 42319034
Alignment:
| Q |
51 |
ttataataagaagcactgctttt-gtttgttgaattgtggtttaatgctcaatcttacctcatgcaggtttggaagattgtgaaatgaagatatgactaa |
149 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42318928 |
ttataataagcagcattgctttttgtttgttgaattttggtttcatgctctatcttacctcttgcaggtttggaagattgtgaaatgaagatatggctaa |
42319027 |
T |
|
| Q |
150 |
aatttga |
156 |
Q |
| |
|
||||||| |
|
|
| T |
42319028 |
aatttga |
42319034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 302 - 483
Target Start/End: Original strand, 42319101 - 42319291
Alignment:
| Q |
302 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgt-------gtgcatgttaagatggttttgttttcaatattgtaactgcatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||| |||| |
|
|
| T |
42319101 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgtccttgaggtgcatgttaggataattttgtttacaatattgtaactccatt |
42319200 |
T |
|
| Q |
395 |
aagctattttttaatcgacacgtttgataggtttgaaga-------atcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgttt |
483 |
Q |
| |
|
||| |||||||||| | || ||||||||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
42319201 |
aagttattttttaa-----aagtgtgataggtttgaagacattggtaccaatgaagatgatgatgatactaatgtaacgtcaaatggtgtatgttt |
42319291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 42319045 - 42319101
Alignment:
| Q |
209 |
taaaatgcgggactatgttcaatattctatacaattcatctggattttacattgcaa |
265 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
42319045 |
taaaatgcgggactatgttcaatcttttatacaattcatctggattttacaatgcaa |
42319101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 45240746 - 45240690
Alignment:
| Q |
209 |
taaaatgcgggactatgttcaatattctatacaattcatctggattttacattgcaa |
265 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
45240746 |
taaaatgcgggactatgttcaatcttttatacaattcatctggattttacaatgcaa |
45240690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 31662188 - 31662082
Alignment:
| Q |
51 |
ttataataagaagcactgctttt-gtttgttgaattgtggtttaatgctcaatcttacctcatgcaggtttggaagattgtgaaatgaagatatgactaa |
149 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31662188 |
ttataataagcagcattgctttttgtttgttgaattttggtttcatgctctatcttacctcttgcaggtttggaagattgtgaaatgaagatatggctaa |
31662089 |
T |
|
| Q |
150 |
aatttga |
156 |
Q |
| |
|
||||||| |
|
|
| T |
31662088 |
aatttga |
31662082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 302 - 483
Target Start/End: Complemental strand, 31662015 - 31661825
Alignment:
| Q |
302 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgt-------gtgcatgttaagatggttttgttttcaatattgtaactgcatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||| |||| |
|
|
| T |
31662015 |
aggattttacattgcaaattaaatggaagctttgataagattctaaatgtccttgaggtgcatgttaggataattttgtttacaatattgtaactccatt |
31661916 |
T |
|
| Q |
395 |
aagctattttttaatcgacacgtttgataggtttgaaga-------atcaatgaagatgataatgatactaatgtaaaatcaaacagtgtatgttt |
483 |
Q |
| |
|
||| |||||||||| | || ||||||||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
31661915 |
aagttattttttaa-----aagtgtgataggtttgaagacattggtaccaatgaagatgatgatgatactaatgtaacgtcaaatggtgtatgttt |
31661825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 660 - 771
Target Start/End: Original strand, 11074871 - 11074981
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
759 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||| ||||||||||||||||| || | ||||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
11074871 |
atctaatcctaatgtacaatgcacacaagacctaaaa-accctaatccttgatttagagcgggaaaactttgctttaactacacttaatgtacaattcaa |
11074969 |
T |
|
| Q |
760 |
atttcaaatccc |
771 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11074970 |
atttcaaatccc |
11074981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 31662071 - 31662015
Alignment:
| Q |
209 |
taaaatgcgggactatgttcaatattctatacaattcatctggattttacattgcaa |
265 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| |
|
|
| T |
31662071 |
taaaatgcgggactatgttcaatcttttatacaattcatctggattttacaatgcaa |
31662015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 773
Target Start/End: Original strand, 34703777 - 34703889
Alignment:
| Q |
661 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
760 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
34703777 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
34703876 |
T |
|
| Q |
761 |
tttcaaatccccc |
773 |
Q |
| |
|
||||||| |||| |
|
|
| T |
34703877 |
attcaaattcccc |
34703889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 773
Target Start/End: Complemental strand, 28549424 - 28549312
Alignment:
| Q |
661 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
760 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
28549424 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
28549325 |
T |
|
| Q |
761 |
tttcaaatccccc |
773 |
Q |
| |
|
||||||| |||| |
|
|
| T |
28549324 |
attcaaattcccc |
28549312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 661 - 773
Target Start/End: Original strand, 41866994 - 41867106
Alignment:
| Q |
661 |
tctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaa |
760 |
Q |
| |
|
|||| |||||||||||||| ||||||| || |||||||||||||||||||||||||| | ||||| |||||||||| | |||||| | ||||||| || |
|
|
| T |
41866994 |
tctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgattttgagcgggaaaaatttgctttaaatgcatttactctcaaatttgaa |
41867093 |
T |
|
| Q |
761 |
tttcaaatccccc |
773 |
Q |
| |
|
||||||| |||| |
|
|
| T |
41867094 |
attcaaattcccc |
41867106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 660 - 771
Target Start/End: Original strand, 33865606 - 33865716
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaa |
759 |
Q |
| |
|
||||| |||||||||||||| ||||||| || ||||| ||||||||| ||||||| || | ||||| |||||||||||| || ||||||| ||||||| |
|
|
| T |
33865606 |
atctaatcctaatgtacaatgcacacaagacctaaaa-accctaatctttgatttagagcgggaaaactttgctttaactgcacttaatgtacaattcaa |
33865704 |
T |
|
| Q |
760 |
atttcaaatccc |
771 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33865705 |
atttcaaatccc |
33865716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 749
Target Start/End: Original strand, 13946656 - 13946745
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatg |
749 |
Q |
| |
|
||||| |||||| |||||| ||||||||| || |||||||||||||||| |||||| | ||||| || || |||||| |||||||||| |
|
|
| T |
13946656 |
atctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttggttttgagcgggaaaattgtgatttaaccacatttaatg |
13946745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 695 - 771
Target Start/End: Complemental strand, 5790584 - 5790508
Alignment:
| Q |
695 |
aaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattcaaatttcaaatccc |
771 |
Q |
| |
|
|||||||||||||| |||||| | | ||||| || ||| ||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
5790584 |
aaaaccctaatcctagattttaagcgggaaaattctgccttaactacacttaatgtaaaatttcaatttcaaatccc |
5790508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 637
Target Start/End: Original strand, 5402 - 5451
Alignment:
| Q |
588 |
gttggatgtgtgtattatgtatgatattatatttttaattatttctaaat |
637 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5402 |
gttggatatgtgtattatgtatgatattgcatttttaattatttctaaat |
5451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 733
Target Start/End: Complemental strand, 30441363 - 30441290
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaacacttaaaaaaccctaatccttgattttgaaccggaaacttttgct |
733 |
Q |
| |
|
||||| |||||||||||||| |||||||||| | |||||||||| ||| ||||| || | ||||||||||||| |
|
|
| T |
30441363 |
atctaatcctaatgtacaatgcacacaacacctctaaaaccctaaacctagatttagagcgggaaacttttgct |
30441290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 771
Target Start/End: Original strand, 5141 - 5253
Alignment:
| Q |
660 |
atctagtcctaatgtacaatacacacaaca-cttaaaaaaccctaatccttgattttgaaccggaaacttttgctttaactacatttaatgtcaaattca |
758 |
Q |
| |
|
||||| |||||||||||||| | |||| | || |||||||||||| ||| |||| ||| | ||||| || ||| ||||||||| ||| ||| |||||| |
|
|
| T |
5141 |
atctaatcctaatgtacaatgtaaacaagatctaaaaaaaccctaaacctagattatgagcaggaaaattctgccttaactacacttattgttaaattcc |
5240 |
T |
|
| Q |
759 |
aatttcaaatccc |
771 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5241 |
aatttcaaatccc |
5253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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