View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6002_low_12 (Length: 231)
Name: NF6002_low_12
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6002_low_12 |
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| [»] scaffold0817 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 50 - 215
Target Start/End: Complemental strand, 32024750 - 32024585
Alignment:
| Q |
50 |
cagaatatactcccagatgtatccatcagaaccatgacaagaggaaactgtttgtaacgattgacatcacgaacaagacaaacatgaacaatccgaacaa |
149 |
Q |
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| T |
32024750 |
cagaatatactcacagatgtatccatcagaaccatgtcaagaggaaactgtctgtaacgattgacatcacgaacaagacaaacatgaacaatccgaacaa |
32024651 |
T |
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| Q |
150 |
ctatgttcatgattccttcacatggttgatctcataggtgttattcgatcttcatgccattataat |
215 |
Q |
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| T |
32024650 |
ctatgttcatgattccttcacatggttgatctcataggtgttattcgatcttcatgccattataat |
32024585 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 5244221 - 5244300
Alignment:
| Q |
137 |
acaatccgaacaactatgttc-atgattccttcacatggttgatctcataggtgttattcgatcttcatgccattataat |
215 |
Q |
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| T |
5244221 |
acaatccgaacaaccacgatccatgattccttcacagggttgatttcagagatgttatcagatcttgatgccattataat |
5244300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0817 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0817
Description:
Target: scaffold0817; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 4522 - 4601
Alignment:
| Q |
137 |
acaatccgaacaactatgttc-atgattccttcacatggttgatctcataggtgttattcgatcttcatgccattataat |
215 |
Q |
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|||||||||||||| | | || |||||||||||||| || ||||||||||| |||||| ||||| ||||||||||||| |
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| T |
4522 |
acaatccgaacaaccacgatccatgattccttcacagggctgatctcatagatgttatcgaatcttgatgccattataat |
4601 |
T |
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