View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6002_low_3 (Length: 568)
Name: NF6002_low_3
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6002_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 11 - 550
Target Start/End: Complemental strand, 30763536 - 30762995
Alignment:
| Q |
11 |
cagagatcgacgagtataagaagaagtatgactttgtggttttctccatatattgtagttca-attacagttgttgtgtcatttaaattttgtttatttg |
109 |
Q |
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| T |
30763536 |
cagagatcgacgagtataagaagaagtatgactttgtggttttgtccatatattgtagttcttattacagttgttgtgtcatttaaattttgtttatttg |
30763437 |
T |
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| Q |
110 |
tgatttgttaggatgaagagtgctgcagttcagttaactcaaggtgtgagtcaagtttccatgcacagctctatgtcgttgtcggatgatctg-tcaaaa |
208 |
Q |
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| T |
30763436 |
tgatttgttaggatgaagagtgccgcaattcagttaactcaaggtgtgagtcaagtttccatgcacagctctatgtcgttgtcagatgatctgctcaaaa |
30763337 |
T |
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| Q |
209 |
caaagagcgtgacgattgaaaatttgattgagtcaagtgaggtaattgatttgtttatcaatgatactgacatggtcgctaattaagtatggtagttcac |
308 |
Q |
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| T |
30763336 |
caaagaggatgatgattgaaaatctgattgagtcaagtgaggtaattgatttgtttatcaatgatactgacatggtcgctgattaagtatggtagttcac |
30763237 |
T |
|
| Q |
309 |
atactgacgaataatgcatggttgtgagtattgatgcgtatcatatttatgagccagggatgagattaaacaaagagaccatcattgataaaaaatagtt |
408 |
Q |
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| T |
30763236 |
atactaacgaataatccatggttgtgagtattgatgcgtatcatatttatgagccagggatgagattaaacaaagagaccatcattgataaaaaatagtt |
30763137 |
T |
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| Q |
409 |
ttaaaatagaatgttagttgaagatttgttatattataccgtaatttagaaagcaaatactgacatgtattattataactagaatggtgattcacttttt |
508 |
Q |
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| T |
30763136 |
ttaaaatagaatgttagttgaagatttgttatattatgccgtaatttagaaagcaaatactgacatgtattattataactagaatggtgattcacttttt |
30763037 |
T |
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| Q |
509 |
gtgtagttagatttgtttgcctttattagcggaaacaatact |
550 |
Q |
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| T |
30763036 |
gtgtagttagatttgtttgcctttattagcagaaacaatact |
30762995 |
T |
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