View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6002_low_6 (Length: 306)
Name: NF6002_low_6
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6002_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31492293 - 31492458
Alignment:
| Q |
1 |
tcaaatctctttaatattttgttcaagaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacagg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31492293 |
tcaaatctctttgatattttgttcaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacag- |
31492391 |
T |
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| Q |
101 |
ttccaccagttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
175 |
Q |
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| T |
31492392 |
--------gttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
31492458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31497682 - 31497847
Alignment:
| Q |
1 |
tcaaatctctttaatattttgttcaagaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacagg |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31497682 |
tcaaatctctttgatattttgttcaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacag- |
31497780 |
T |
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| Q |
101 |
ttccaccagttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
175 |
Q |
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| T |
31497781 |
--------gttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
31497847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 31503068 - 31503234
Alignment:
| Q |
1 |
tcaaatctctttaatattttgttcaa-gaacatggcttactgtggatacccacaggcttatccacatgcatatccaccggatccaccaacttattcacag |
99 |
Q |
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| T |
31503068 |
tcaaatctctttgatattttgttcaaagaacatggcttactgtggatacccagaggcttatccacatgcatatccaccgaatccaccaacttattcacag |
31503167 |
T |
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| Q |
100 |
gttccaccagttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
175 |
Q |
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| T |
31503168 |
---------gttccacagacttattcacatgctccaccaacttacccacaacctccatcagtttatccacaggttc |
31503234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 50391329 - 50391227
Alignment:
| Q |
186 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50391329 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaataataa |
50391230 |
T |
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| Q |
286 |
tga |
288 |
Q |
| |
|
||| |
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|
| T |
50391229 |
tga |
50391227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 50394603 - 50394501
Alignment:
| Q |
186 |
ctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctgcaatgataa |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| || |||||||||| ||| |||| |
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| T |
50394603 |
ctgtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataa |
50394504 |
T |
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| Q |
286 |
tga |
288 |
Q |
| |
|
||| |
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|
| T |
50394503 |
tga |
50394501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 50386178 - 50386094
Alignment:
| Q |
192 |
ctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggttaacaacagcaccaaagaaagttgcagctg |
276 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| || |||||||||| |
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| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctg |
50386094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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