View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6002_low_8 (Length: 259)
Name: NF6002_low_8
Description: NF6002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6002_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2685859 - 2685618
Alignment:
| Q |
1 |
tgatacagattcaatagttttcaatttttcatcaaaccaacacggtgttaactactcgtttaccatcggaaatccatcgattttttctagactagttgtg |
100 |
Q |
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| T |
2685859 |
tgatacagattcaatagttttcaatttttcatcaaaccaacacggtgttaactactcgtttaccatcggaaatccatcgattttttctagactagttgtg |
2685760 |
T |
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| Q |
101 |
gattcgggtggtcaacttcaacgtcgaacatggatacaaagtatgaaaacatggacaaatttttggtatgcaccaaaagatcaatgtgatagttacagag |
200 |
Q |
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| T |
2685759 |
gattcgggtggtcaacttcaacgtcgaacatggatacaaagtatgaaaacatggacaaatttttggtatgcaccaaaagatcaatgtgatagttacagag |
2685660 |
T |
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| Q |
201 |
aatgtggtccttatggtttatgtgacacaaatgcttcacctg |
242 |
Q |
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| T |
2685659 |
aatgtggtccttatggtttatgcgacacaaatggttcacctg |
2685618 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 36361365 - 36361455
Alignment:
| Q |
152 |
tggacaaatttttggtatgcaccaaaagatcaatgtgatagttacagagaatgtggtccttatggtttatgtgacacaaatgcttcacctg |
242 |
Q |
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| T |
36361365 |
tggacaaaattttggtatgcaccaaaagaccaatgtgataattacaaagagtgtggtccatttggtgtgtgtgacacaaatgcttcacctg |
36361455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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