View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6003_high_2 (Length: 590)
Name: NF6003_high_2
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6003_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 343
Target Start/End: Original strand, 38611243 - 38611569
Alignment:
| Q |
12 |
agcagaacctgtgatgaactgcaaaagtagaaaaaaggtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatat |
111 |
Q |
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| T |
38611243 |
agcagaaactgtgatgaactgcaaaagtaaaaaaaaggtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatat |
38611342 |
T |
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| Q |
112 |
ttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcatttaaagtaaa |
211 |
Q |
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| T |
38611343 |
ttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcatttaaagtaaa |
38611442 |
T |
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| Q |
212 |
ttattcaacaccatccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtgcttggccgatgaaaggtcaagac |
311 |
Q |
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| T |
38611443 |
ttattcaacaccatccaaaaaagacagcaagtttattcagattgag-----tagtagtattaacttttaatgatgtgcttggctgatgaaaggtcaagac |
38611537 |
T |
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| Q |
312 |
cacacaactttcaaacaggcagcatggcggac |
343 |
Q |
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| T |
38611538 |
cacacaactttcaaacaggcagcatggcggac |
38611569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 402 - 545
Target Start/End: Original strand, 38611715 - 38611858
Alignment:
| Q |
402 |
aaatgttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatgtagacccgtgaatttgataagagctaaaacaacca |
501 |
Q |
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| T |
38611715 |
aaatgttttgctaatatccctaattgatgatgaactgtttgaatctgatttagaactccttgatgtagacccgtgaatttgataagagctaaaacaacca |
38611814 |
T |
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| Q |
502 |
cttcagtccttcacctcaaaatctagcgtaacaacaacaacaac |
545 |
Q |
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| T |
38611815 |
cttcagtccttcacctcaaaatctagcgtaacaacaacaacaac |
38611858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 34726587 - 34726741
Alignment:
| Q |
49 |
gtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatc |
148 |
Q |
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| T |
34726587 |
gtattaccactgcgtgaataagacaaagccgattggcttgattggacagcttgacgatgatatttacggcgccttgcattgtgatttgaaagttgtcgtc |
34726686 |
T |
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| Q |
149 |
tgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcattt |
203 |
Q |
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| T |
34726687 |
tgcagcttttcttctttccatcaaactcaaacagatcatggaaccttcagcattt |
34726741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 203
Target Start/End: Original strand, 34721459 - 34721613
Alignment:
| Q |
49 |
gtattaccacaggatgaagaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatc |
148 |
Q |
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| T |
34721459 |
gtattaccacagggtgacgaagacaaagctgattgacttgattgggcagttttacgagaatgattacggcgccttgcattgtgttgtgaaagacgtcgtc |
34721558 |
T |
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| Q |
149 |
tgcagcttctcttcttttcatcgaactcaaacagatcatggaaccttcagcattt |
203 |
Q |
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| T |
34721559 |
tgcagcttttcttctttccatcaaactcaaacagatcatggaaccttcagtattt |
34721613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 34730819 - 34730952
Alignment:
| Q |
67 |
gaagacaaagctgattgacttgattggacagattcaggatgatatttacggtgtcttgtattgtgacgtgaaagttgtcatctgcagcttctcttctttt |
166 |
Q |
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| T |
34730819 |
gaagacaaaactgattgacttgattggagtgcttcaggctgatgcttacgtcgccttgcattgtgacgtgaaagttgttctctgcagcttcttttctttt |
34730918 |
T |
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| Q |
167 |
catcgaactcaaacagatcatggaaccttcagca |
200 |
Q |
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| T |
34730919 |
catcgaactcagccagattgtggaaccttcagca |
34730952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 34726770 - 34726843
Alignment:
| Q |
212 |
ttattcaacaccatccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtgct |
290 |
Q |
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| T |
34726770 |
ttattcaacaccatccaaaaaagacagcaagttgaatcagattgag-----tattaatattaacttttaatgatgtgct |
34726843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 406 - 470
Target Start/End: Original strand, 34722165 - 34722229
Alignment:
| Q |
406 |
gttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatgtaga |
470 |
Q |
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| T |
34722165 |
gttttgctaatatccctagttggtgatgaactgattgaatctgatttcgaactccctgatgtaga |
34722229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 34730951 - 34730996
Alignment:
| Q |
217 |
caacaccatccaaaaaagacagcaagtttattcagattgagtagta |
262 |
Q |
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| T |
34730951 |
caacaccattcaaaaaagacagcaagtttaatcagactgagtagta |
34730996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 34721655 - 34721713
Alignment:
| Q |
225 |
tccaaaaaagacagcaagtttattcagattgagtagtatagtagtattaacttttaatgatgtg |
288 |
Q |
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| T |
34721655 |
tccaaaaaagacagcaagttgaatcagattgagtagtaa-----tattaacttttaatgatgtg |
34721713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 466
Target Start/End: Original strand, 34731457 - 34731519
Alignment:
| Q |
404 |
atgttttgctaatatccctaattgaagatgaactgtttgaatctgatttagaactccttgatg |
466 |
Q |
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| T |
34731457 |
atgttttgctattattcctatttaacgatgaactatttgaagctgattttgaactccttgatg |
34731519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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