View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6003_low_1 (Length: 735)
Name: NF6003_low_1
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6003_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 242 - 717
Target Start/End: Complemental strand, 10730121 - 10729627
Alignment:
| Q |
242 |
ttaggggaggatctcatatgaacatttgagttggtgactgcacgaatactttattaatgcattcagtcaataatttgtatatatggtatacaaaattaaa |
341 |
Q |
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| T |
10730121 |
ttaggggaggatctcatgtgaacatttgagttggtaactgcacgaatacttt--taatgcattcagtcaataatttgtat----ggtatacaaaattaaa |
10730028 |
T |
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| Q |
342 |
ttgcaaatataaatacaaataccttcaacaaaatttgtccatattgatagctttatgatagacatagataggagtatatgatacgtatatttgggattac |
441 |
Q |
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| T |
10730027 |
ttgcacatataaatacaaataccttcaacaaaatttgtccatattgatagctttatgatagacatagataggagtatatgatacgtatatttgggattac |
10729928 |
T |
|
| Q |
442 |
cctaacttaactttcataaccttgagactgacagagaaata----------------tacattttctgctaatcttaaattaattccttcccatttgttt |
525 |
Q |
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| T |
10729927 |
cctaacttaactttcataaccttgagactgacatataaatatactactactctaacgtacattttctgctaatc-----ttaattccttcccatttgttt |
10729833 |
T |
|
| Q |
526 |
gtttacttcctttcttattcactatttcaacttccaatgcatcgtggtcctcagatgttgccatttcacgttctcttctgactcttcccatt-------- |
617 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10729832 |
gttttcttcctttcttattcactatttcaacttccaatgcatcgtggtcctcagatgttgccatttcacgttctcttctgactcttcccatttatccaca |
10729733 |
T |
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| Q |
618 |
------tccataaccacttgttcattgttctagcctttccatttccacactctatatatgtcaagtgttattattactccaagatttattttttcaacaa |
711 |
Q |
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| T |
10729732 |
ctcttctccataaccacttgttcattgttctagcctttccatttccacactctatatatgccaagtgttattattactccaagatttattttttcaacaa |
10729633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 10730384 - 10730149
Alignment:
| Q |
9 |
agcacagacacaaagatggatggtggggacaatggggacaaagttgcagtgttggagatttggatttgggaataggtaagtaggatggatgagatgagac |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
10730384 |
agcacaaacacaaagatggatggtggggacaatggggacaaagttgcagtgttggagatttggatttggtaataggta-gtaggatggatgagatgagac |
10730286 |
T |
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| Q |
109 |
ttgagagtgtttatgagatgaaaaaccccactcactgccatggtatgctgtcgtggccctttctacttttaaggctaaatacaacccaaactccaaggta |
208 |
Q |
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| T |
10730285 |
ttgagagtgtttatgagatgaaaaaccccactcactgccatggtatgctgtcgtggccctttctacttttaaggctaaatacaacccaaactccaaggta |
10730186 |
T |
|
| Q |
209 |
ggagtaaattttcagcttcaaaaaataatttcattag |
245 |
Q |
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| T |
10730185 |
ggagtaaattttcagcttcaaaaaataatttcattag |
10730149 |
T |
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Back To:
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