View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6003_low_10 (Length: 271)

Name: NF6003_low_10
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6003_low_10
NF6003_low_10
[»] chr5 (13 HSPs)
chr5 (72-256)||(29096690-29096874)
chr5 (120-208)||(29039216-29039305)
chr5 (67-119)||(6895207-6895259)
chr5 (67-116)||(3099096-3099145)
chr5 (67-116)||(16899912-16899961)
chr5 (67-116)||(6894353-6894402)
chr5 (67-116)||(40366262-40366311)
chr5 (67-118)||(39084321-39084372)
chr5 (68-122)||(32694780-32694834)
chr5 (67-116)||(19432550-19432599)
chr5 (67-120)||(29627138-29627191)
chr5 (67-116)||(31559043-31559092)
chr5 (68-116)||(3098307-3098355)
[»] chr8 (10 HSPs)
chr8 (67-120)||(40784805-40784858)
chr8 (67-116)||(7601716-7601765)
chr8 (65-116)||(30427083-30427134)
chr8 (67-124)||(14445243-14445300)
chr8 (67-116)||(41723211-41723260)
chr8 (67-116)||(42093429-42093478)
chr8 (72-122)||(30136730-30136780)
chr8 (67-121)||(37727099-37727153)
chr8 (67-116)||(11596580-11596629)
chr8 (71-116)||(14446061-14446106)
[»] chr1 (11 HSPs)
chr1 (67-118)||(39841274-39841325)
chr1 (69-116)||(1744028-1744075)
chr1 (67-116)||(39840513-39840562)
chr1 (69-122)||(41147287-41147340)
chr1 (67-120)||(1743205-1743258)
chr1 (67-112)||(39025382-39025427)
chr1 (68-121)||(43380545-43380598)
chr1 (67-116)||(46047286-46047335)
chr1 (68-115)||(29373965-29374012)
chr1 (69-116)||(30856906-30856953)
chr1 (67-121)||(51465749-51465803)
[»] chr3 (12 HSPs)
chr3 (67-116)||(54280855-54280904)
chr3 (69-121)||(43631220-43631272)
chr3 (69-121)||(43655337-43655389)
chr3 (67-116)||(54295103-54295152)
chr3 (68-119)||(42488451-42488502)
chr3 (67-122)||(51218101-51218156)
chr3 (66-116)||(43656220-43656270)
chr3 (74-116)||(41354792-41354834)
chr3 (67-116)||(21103611-21103660)
chr3 (67-116)||(34985101-34985150)
chr3 (67-116)||(42489287-42489336)
chr3 (73-121)||(53427978-53428026)
[»] chr2 (14 HSPs)
chr2 (68-116)||(44075838-44075886)
chr2 (67-116)||(3834929-3834978)
chr2 (66-119)||(2215045-2215098)
chr2 (67-116)||(5429804-5429853)
chr2 (67-116)||(16011368-16011417)
chr2 (67-116)||(28783809-28783858)
chr2 (67-116)||(39233938-39233987)
chr2 (65-113)||(2076413-2076461)
chr2 (67-133)||(5429035-5429101)
chr2 (67-121)||(28784824-28784878)
chr2 (67-116)||(2075676-2075725)
chr2 (67-116)||(15994488-15994537)
chr2 (67-116)||(18234193-18234242)
chr2 (65-121)||(35908428-35908484)
[»] chr4 (15 HSPs)
chr4 (67-122)||(54110490-54110545)
chr4 (67-116)||(865418-865467)
chr4 (67-120)||(9170695-9170748)
chr4 (65-116)||(866277-866328)
chr4 (67-116)||(572178-572227)
chr4 (67-116)||(29145244-29145293)
chr4 (68-116)||(48614227-48614275)
chr4 (67-113)||(11701690-11701736)
chr4 (67-113)||(29517841-29517887)
chr4 (71-121)||(48615231-48615281)
chr4 (71-113)||(53118782-53118824)
chr4 (67-116)||(29144856-29144905)
chr4 (71-116)||(54109501-54109546)
chr4 (78-122)||(12658381-12658425)
chr4 (67-115)||(42712141-42712189)
[»] chr7 (10 HSPs)
chr7 (67-116)||(41345438-41345487)
chr7 (67-122)||(37796594-37796649)
chr7 (67-120)||(14419388-14419441)
chr7 (71-116)||(26828768-26828813)
chr7 (67-122)||(6822601-6822656)
chr7 (73-116)||(26829629-26829672)
chr7 (66-124)||(47723484-47723542)
chr7 (67-116)||(34458857-34458906)
chr7 (67-116)||(41567930-41567979)
chr7 (68-117)||(46196746-46196795)
[»] chr6 (3 HSPs)
chr6 (67-115)||(544343-544391)
chr6 (67-112)||(3184691-3184736)
chr6 (72-116)||(1822942-1822986)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 72 - 256
Target Start/End: Complemental strand, 29096874 - 29096690
Alignment:
Q  72 aaaatcaaaactggaccaaattacatggatgattatcatatttaaacctttctcatattgttggtacatgaattaatgtaaacatgaatagttcagtaag 171  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  29096874 aaaatcaaaactggaccaaattacatggacgattttcatatttaaacctttcttatattgttggtacatgaatgaatgtaaacatgaatagctcagtaag 29096775  T
Q  172 aaactagggaacaattcctctcccgtgaatgtgaaaagctaactattgcactaaagaggaaaagaccggtaagaaatggtaaaaa 256  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29096774 aaactagggaacaattcctctcccttgaacatgaaaagctaactattgcactaaagaggaaaagaccggtaagaaatggtaaaaa 29096690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 29039216 - 29039305
Alignment:
Q  120 tttctcatattgttggtacatgaattaatgtaaacatgaatagtt-cagtaagaaactagggaacaattcctctcccgtgaatgtgaaaa 208  Q
    ||||| ||||||||||||||||  | |||||||||||||||| || |||||||||||||||||||| ||||||||||||||  |||||||    
T  29039216 tttcttatattgttggtacatgtttgaatgtaaacatgaataatttcagtaagaaactagggaacagttcctctcccgtgaccgtgaaaa 29039305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 6895207 - 6895259
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacc 119  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  6895207 ggacgaaaatcaaaactggaccaaattacaaggacgattatcatatttaaacc 6895259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 3099096 - 3099145
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  3099096 ggacgaaaattaaaactggaccaaattacatggacgattatcatatttaa 3099145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 16899961 - 16899912
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  16899961 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaa 16899912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 6894402 - 6894353
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| | |||||| | |||||||||||||||||||    
T  6894402 ggacgaaaatcaaaactggcctaaattagagggatgattatcatatttaa 6894353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 40366311 - 40366262
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  |||||||||| ||| |||||||||||||||    
T  40366311 ggacgaaaatcaaaactgacccaaattacagggacgattatcatatttaa 40366262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 39084321 - 39084372
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaac 118  Q
    ||||||||||||||| ||| |||||||| | ||| |||||||||||||||||    
T  39084321 ggacgaaaatcaaaattggcccaaattagagggacgattatcatatttaaac 39084372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 32694780 - 32694834
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    |||||||||||||||||| ||||| |||| ||  ||||||||||||||| |||||    
T  32694780 gacgaaaatcaaaactggcccaaactacaggggcgattatcatatttaagccttt 32694834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 19432550 - 19432599
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||| ||||||||||||| ||||||||||| | | |||||||||||||||    
T  19432550 ggacaaaaatcaaaactgaaccaaattacaggaacgattatcatatttaa 19432599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 29627138 - 29627191
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacct 120  Q
    |||||||||||||||| |  |||||||||| ||||||  |||||||||||||||    
T  29627138 ggacgaaaatcaaaacggacccaaattacaaggatgaaaatcatatttaaacct 29627191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 31559043 - 31559092
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| | ||||||||  || |||||||||||||||    
T  31559043 ggacgaaaatcaaaactggccaaaattacagtgacgattatcatatttaa 31559092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 3098355 - 3098307
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||  | |||||||| ||| |||||||||||||||    
T  3098355 gacgaaaatcaaaactgacctaaattacagggacgattatcatatttaa 3098307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 40784858 - 40784805
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacct 120  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40784858 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaaacct 40784805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 7601716 - 7601765
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  7601716 ggacgaaaatcaaaactggcccaaattacagggacgattatcatatttaa 7601765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 30427134 - 30427083
Alignment:
Q  65 aaggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||| ||||||| ||||||||||| ||| |||||||||||||||    
T  30427134 aaggacgaaaataaaaactgaaccaaattacagggacgattatcatatttaa 30427083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 14445300 - 14445243
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctttct 124  Q
    |||||||||| |||||| ||||||||||||  || ||||||||||||||||| |||||    
T  14445300 ggacgaaaattaaaacttgaccaaattacaaagacgattatcatatttaaacatttct 14445243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 41723260 - 41723211
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||| ||||||||||| |||||||||||| ||| |||||||||||||||    
T  41723260 ggacggaaatcaaaacttgaccaaattacagggacgattatcatatttaa 41723211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 42093478 - 42093429
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||    
T  42093478 ggacgaaaatcaaaactggttcaaattacagggacgattatcatatttaa 42093429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 30136730 - 30136780
Alignment:
Q  72 aaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    |||||||||| |||  ||||||||||||| ||||||||||||||| |||||    
T  30136730 aaaatcaaaattggttcaaattacatggacgattatcatatttaagccttt 30136780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 37727153 - 37727099
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||||| | |||||||||||| ||  ||||||||||| ||||    
T  37727153 ggacgaaaatcaaaactggtctaaattacatggacgaaaatcatatttaagcctt 37727099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 11596580 - 11596629
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| |||||||||  ||| |||| ||||||||||    
T  11596580 ggacgaaaatcaaaactggtccaaattactgggacgattctcatatttaa 11596629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 14446061 - 14446106
Alignment:
Q  71 gaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||| ||| |||||||||| ||| |||||||||||||||    
T  14446061 gaaaatcaaaattggcccaaattacagggacgattatcatatttaa 14446106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 39841274 - 39841325
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaac 118  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  39841274 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaaac 39841325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 1744028 - 1744075
Alignment:
Q  69 acgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1744028 acgaaaatcaaaactggcccaaattacatagatgattatcatatttaa 1744075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 39840562 - 39840513
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  39840562 ggacgaaaatcaaaactgaccaaaattacatggatgattatcatatttaa 39840513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 41147287 - 41147340
Alignment:
Q  69 acgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||    
T  41147287 acgaaaatcaaaactggcccaaattacaaggacgattatcatatttaagccttt 41147340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 1743258 - 1743205
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacct 120  Q
    |||||||||||||||||| || |||||| | ||| |||||||||||||||||||    
T  1743258 ggacgaaaatcaaaactgaactaaattatagggacgattatcatatttaaacct 1743205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 39025427 - 39025382
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatat 112  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||    
T  39025427 ggacgaaaatcaaaattggaccaaattacagggataattatcatat 39025382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 43380545 - 43380598
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    |||||||||||||||||  |||||||||| ||| ||||||||||||||| ||||    
T  43380545 gacgaaaatcaaaactgatccaaattacagggacgattatcatatttaagcctt 43380598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 46047286 - 46047335
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  46047286 ggacgaaaattaaaattggactaaattacatggacgattatcatatttaa 46047335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 29373965 - 29374012
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatattta 115  Q
    |||||||||||||||||  |||||||||| ||| ||||||||||||||    
T  29373965 gacgaaaatcaaaactgatccaaattacaaggacgattatcatattta 29374012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 30856906 - 30856953
Alignment:
Q  69 acgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||||||    
T  30856906 acgaaaatcaaaactagaccaaattatagggaagattatcatatttaa 30856953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 51465803 - 51465749
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||||  |||||||||| |||  |||||||||||||| ||||    
T  51465803 ggacgaaaatcaaaactgatccaaattacagggactattatcatatttaagcctt 51465749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 54280904 - 54280855
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  54280904 ggacgaaaatcaaaactggaccaaattacagggacgattatcatatttaa 54280855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 43631220 - 43631272
Alignment:
Q  69 acgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  43631220 acgaaaatcaaaactggaccaaatcacatggacgattatcatatttaagcctt 43631272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 43655389 - 43655337
Alignment:
Q  69 acgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  43655389 acgaaaatcaaaactggcccaaattaaatggatgattatcatatttaagcctt 43655337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 54295103 - 54295152
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  54295103 ggacgaaaatcaaaactgacccaaattacatggacgattatcatatttaa 54295152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 42488502 - 42488451
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacc 119  Q
    |||||||||||||||||   ||||||||| ||||||||||||||||||||||    
T  42488502 gacgaaaatcaaaactgactcaaattacagggatgattatcatatttaaacc 42488451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 51218156 - 51218101
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    ||||||| |||||||||||||||||||| | |||  ||||||||||||||||||||    
T  51218156 ggacgaatatcaaaactggaccaaattatagggacaattatcatatttaaaccttt 51218101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 43656220 - 43656270
Alignment:
Q  66 aggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||  |||||||||| ||| |||||||||||||||    
T  43656220 aggacgaaaatcaaaactgtcccaaattacaaggacgattatcatatttaa 43656270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 41354792 - 41354834
Alignment:
Q  74 aatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  41354792 aatcaaaactggaccaaagtacatgaacgattatcatatttaa 41354834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 21103611 - 21103660
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| |||||||||| ||| ||  |||||||||||    
T  21103611 ggacgaaaatcaaaactggtccaaattacagggacgaaaatcatatttaa 21103660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 34985150 - 34985101
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| ||||||||||||||  || |||||| ||||||||    
T  34985150 ggacgaaaatcaaaattggaccaaattacacagacgattattatatttaa 34985101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 42489287 - 42489336
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  |||||||||| |||  ||||||||||||||    
T  42489287 ggacgaaaatcaaaactgacccaaattacaaggacaattatcatatttaa 42489336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 53427978 - 53428026
Alignment:
Q  73 aaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||||||||||   | ||||||||||||||| ||||    
T  53427978 aaatcaaaactggaccaaattacagaaacgattatcatatttaagcctt 53428026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 44075886 - 44075838
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  44075886 gacgaaaatcaaaactggaccaaattacagggacgattatcatatttaa 44075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 3834978 - 3834929
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  3834978 ggacgaaaatcaaaactagaccaaattacagggacgattatcatatttaa 3834929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 2215045 - 2215098
Alignment:
Q  66 aggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacc 119  Q
    |||||||||||||||||||| |||||||||| ||| |||||| |||||| ||||    
T  2215045 aggacgaaaatcaaaactggcccaaattacagggacgattattatattttaacc 2215098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 5429804 - 5429853
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| |||||||||||| | ||| |||||||||||||||    
T  5429804 ggacgaaaatcaaaattggaccaaattatagggacgattatcatatttaa 5429853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 16011417 - 16011368
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||||| |||||||| | | |||||||||||||||    
T  16011417 ggacgaaaatcaaaactggactaaattacaagaacgattatcatatttaa 16011368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 28783858 - 28783809
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  28783858 ggacgaaaattaaaattggactaaattacatggacgattatcatatttaa 28783809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 39233938 - 39233987
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| || ||||||||||| ||| |||||||||||||||    
T  39233938 ggacgaaaatcaaaattgaaccaaattacagggacgattatcatatttaa 39233987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 2076413 - 2076461
Alignment:
Q  65 aaggacgaaaatcaaaactggaccaaattacatggatgattatcatatt 113  Q
    |||||||||||||||||||||||||||||| | |||  |||||||||||    
T  2076413 aaggacgaaaatcaaaactggaccaaattatagggacaattatcatatt 2076461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 5429101 - 5429035
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctttctcatattgtt 133  Q
    |||||||||||||||||| ||||||||||| |||  ||| |||||||||| ||| | | ||||||||    
T  5429101 ggacgaaaatcaaaactgaaccaaattacagggacaattttcatatttaagcctattttatattgtt 5429035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 28784824 - 28784878
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||| ||||||||||||  || |||||| |||||||| ||||    
T  28784824 ggacgaaaatcaaaacttgaccaaattacagagacgattataatatttaagcctt 28784878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 2075725 - 2075676
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  | |||||||| ||| |||||||||||||||    
T  2075725 ggacgaaaatcaaaactgacctaaattacagggacgattatcatatttaa 2075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 15994488 - 15994537
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||   ||||||| ||||| |||||||||||||||    
T  15994488 ggacgaaaatcaaaactgactcaaattatatggacgattatcatatttaa 15994537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 18234242 - 18234193
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| ||||||||||  || || ||||||||||||    
T  18234242 ggacgaaaatcaaaactggtccaaattacagagacgaatatcatatttaa 18234193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 35908428 - 35908484
Alignment:
Q  65 aaggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||||||||| | ||||||||||||||  | | |||||||||| ||||    
T  35908428 aaggacgaaaatcaaaactcgcccaaattacatggacaaatgtcatatttaagcctt 35908484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 54110490 - 54110545
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    |||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||    
T  54110490 ggacgaaaatcaaaactgaaacaaattacagggacgattatcatatttaaaccttt 54110545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 865467 - 865418
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  865467 ggacgaaaatcaaaactgacccaaattacagggatgattatcatatttaa 865418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 9170695 - 9170748
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacct 120  Q
    ||||||||||||||||||||||||| |||| | | |||||||||||||||||||    
T  9170695 ggacgaaaatcaaaactggaccaaaatacaagaacgattatcatatttaaacct 9170748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 866277 - 866328
Alignment:
Q  65 aaggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||||| ||| |||||||| ||| |||||||||||||||    
T  866277 aaggacgaaaatcaaaactagactaaattacagggacgattatcatatttaa 866328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 572178 - 572227
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||||| | |||  ||||||||||||||    
T  572178 ggacgaaaatcaaaactggaccaaattatagggacaattatcatatttaa 572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 29145244 - 29145293
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| | |||||||||||| ||| |||||||||||||||    
T  29145244 ggacgaaaatcaaaatttgaccaaattacagggacgattatcatatttaa 29145293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 48614275 - 48614227
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||||||||||    
T  48614275 gacgaaaattaaaactggaccaatttacacggacgattatcatatttaa 48614227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 11701690 - 11701736
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatt 113  Q
    ||||||||||||||||||| |||||||||| ||| |||||| |||||    
T  11701690 ggacgaaaatcaaaactggtccaaattacagggacgattataatatt 11701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 29517841 - 29517887
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatt 113  Q
    ||||||||||||||| || ||||||||||| ||| ||||||||||||    
T  29517841 ggacgaaaatcaaaattgaaccaaattacagggacgattatcatatt 29517887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 48615231 - 48615281
Alignment:
Q  71 gaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctt 121  Q
    ||||||||||||| | |||||||||||||| || |||||||||||| ||||    
T  48615231 gaaaatcaaaactcgtccaaattacatggacgaatatcatatttaagcctt 48615281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 53118824 - 53118782
Alignment:
Q  71 gaaaatcaaaactggaccaaattacatggatgattatcatatt 113  Q
    |||||| |||||||  |||||||||||||||||||||||||||    
T  53118824 gaaaattaaaactgacccaaattacatggatgattatcatatt 53118782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 29144856 - 29144905
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| | || ||||||||| ||| |||||||||||||||    
T  29144856 ggacgaaaatcaaaatttgatcaaattacagggacgattatcatatttaa 29144905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 54109546 - 54109501
Alignment:
Q  71 gaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||||  |||||||| ||| |||||||||||||||    
T  54109546 gaaaatcaaaactggagtaaattacagggacgattatcatatttaa 54109501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 12658425 - 12658381
Alignment:
Q  78 aaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    |||| ||| |||||||||||||| ||||||||||||||| |||||    
T  12658425 aaaaatggcccaaattacatggacgattatcatatttaagccttt 12658381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 42712141 - 42712189
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatattta 115  Q
    |||| |||||||||||||| |||||||||| ||| || |||||||||||    
T  42712141 ggacaaaaatcaaaactggtccaaattacaaggacgactatcatattta 42712189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 41345438 - 41345487
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  41345438 ggacgaaaatcaaaactggaccaaattatagggacgattatcatatttaa 41345487  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 37796649 - 37796594
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    ||||||||||||||||||  |||||||||| ||| ||||||||||||||| |||||    
T  37796649 ggacgaaaatcaaaactgacccaaattacagggacgattatcatatttaagccttt 37796594  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 14419441 - 14419388
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacct 120  Q
    ||||||||||||||||||  ||||| |||| ||| |||||||||||||||||||    
T  14419441 ggacgaaaatcaaaactgccccaaaatacagggacgattatcatatttaaacct 14419388  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 26828813 - 26828768
Alignment:
Q  71 gaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||    
T  26828813 gaaaatcaaaactggaccaaattacagggacaattatcatatttaa 26828768  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 6822656 - 6822601
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaaccttt 122  Q
    ||||||||| ||||||| |||||||||||| |||  |||||||||||||| |||||    
T  6822656 ggacgaaaaccaaaacttgaccaaattacagggacaattatcatatttaagccttt 6822601  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 26829629 - 26829672
Alignment:
Q  73 aaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||    
T  26829629 aaatcaaaactggactaaattacagggacgattatcatatttaa 26829672  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 47723484 - 47723542
Alignment:
Q  66 aggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaacctttct 124  Q
    |||||||||||||||||||| |||||||| | ||| ||  ||||||||||| |||||||    
T  47723484 aggacgaaaatcaaaactggtccaaattatagggacgaaaatcatatttaagcctttct 47723542  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 34458857 - 34458906
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    ||||||||||||||| || ||||||||| |  ||||||||||||||||||    
T  34458857 ggacgaaaatcaaaattgaaccaaattatagagatgattatcatatttaa 34458906  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 41567930 - 41567979
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||| || |||||||||| ||||||  |||||||||||    
T  41567930 ggacgaaaatcaaaacgggcccaaattacagggatgaaaatcatatttaa 41567979  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 46196746 - 46196795
Alignment:
Q  68 gacgaaaatcaaaactggaccaaattacatggatgattatcatatttaaa 117  Q
    ||||||||| |||  |||||||||||||| ||| ||||||||||||||||    
T  46196746 gacgaaaataaaatttggaccaaattacagggacgattatcatatttaaa 46196795  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 544391 - 544343
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatattta 115  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||    
T  544391 ggacgaaaatcaaaactggaccaaattacagagacgattatcatattta 544343  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 3184736 - 3184691
Alignment:
Q  67 ggacgaaaatcaaaactggaccaaattacatggatgattatcatat 112  Q
    ||||||||||||||||| | |||||||||| ||| |||||||||||    
T  3184736 ggacgaaaatcaaaacttgtccaaattacagggacgattatcatat 3184691  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 1822986 - 1822942
Alignment:
Q  72 aaaatcaaaactggaccaaattacatggatgattatcatatttaa 116  Q
    |||||||||||||||||||||||||  ||  ||||||||||||||    
T  1822986 aaaatcaaaactggaccaaattacaaagacaattatcatatttaa 1822942  T

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