View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6003_low_13 (Length: 211)
Name: NF6003_low_13
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6003_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 39422288 - 39422113
Alignment:
| Q |
18 |
atacaagctatagaaacaccaattacaatgcatgggtaataaaagcaaattgatcaaccgtgagccccactacaaaagaacagataaaccttcttcacca |
117 |
Q |
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||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
39422288 |
atacaagctatagaaacaccaattagactgcatgagtaataaaagcaaattgatcaaccgtgagccccactataaaagaacagataaaccttcttcacga |
39422189 |
T |
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| Q |
118 |
aacaaaaatccaaccttgacaaattaaatctctagaacaagaagcaaaaccactacgcattgatccaaaatcatac |
193 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39422188 |
aacaaaaatccaaccttgacgaattaaatctctagaacaagaagcaaaaccactacgcattgatccaaaatcatac |
39422113 |
T |
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