View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6003_low_14 (Length: 208)

Name: NF6003_low_14
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6003_low_14
NF6003_low_14
[»] chr6 (34 HSPs)
chr6 (1-208)||(5334310-5334524)
chr6 (68-208)||(5156036-5156176)
chr6 (68-208)||(5372229-5372369)
chr6 (68-208)||(5398178-5398318)
chr6 (69-208)||(2939043-2939186)
chr6 (68-208)||(5351532-5351672)
chr6 (68-208)||(5098343-5098483)
chr6 (70-206)||(5177873-5178009)
chr6 (70-206)||(5279698-5279834)
chr6 (68-208)||(5448741-5448881)
chr6 (70-206)||(5688928-5689064)
chr6 (77-208)||(5439143-5439274)
chr6 (68-208)||(5100841-5100981)
chr6 (68-208)||(5180797-5180937)
chr6 (68-206)||(5072705-5072843)
chr6 (68-208)||(5126652-5126792)
chr6 (68-208)||(5242535-5242675)
chr6 (68-208)||(5135942-5136082)
chr6 (68-148)||(5256137-5256217)
chr6 (88-208)||(5427032-5427152)
chr6 (1-72)||(5100720-5100790)
chr6 (1-72)||(5398399-5398469)
chr6 (68-208)||(5346161-5346301)
chr6 (68-208)||(5352886-5353026)
chr6 (2-72)||(5255975-5256044)
chr6 (70-203)||(23127335-23127468)
chr6 (9-72)||(5135829-5135891)
chr6 (71-205)||(5065475-5065609)
chr6 (2-54)||(5180635-5180686)
chr6 (68-148)||(5283247-5283327)
chr6 (27-66)||(5439382-5439421)
chr6 (2-56)||(5283100-5283153)
chr6 (69-102)||(2657175-2657208)
chr6 (27-72)||(5351723-5351768)
[»] chr3 (4 HSPs)
chr3 (71-206)||(47985419-47985554)
chr3 (71-206)||(48003993-48004128)
chr3 (71-206)||(47994706-47994841)
chr3 (71-206)||(48013278-48013413)
[»] chr7 (1 HSPs)
chr7 (68-208)||(36212944-36213084)
[»] chr4 (1 HSPs)
chr4 (94-143)||(25569037-25569086)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 5334524 - 5334310
Alignment:
Q  1 ctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttcttcacaatgaaatcattctcgaaaacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5334524 ctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttcttcaaaatgaaatcattctcgaaaacaa 5334425  T
Q  101 aaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaag-------aagtctaatgcctcactcttataga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  5334424 aaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaagttagaagtctaatgcctcactcttataga 5334325  T
Q  194 gttgaatggtggcct 208  Q
    |||||||||||||||    
T  5334324 gttgaatggtggcct 5334310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5156036 - 5156176
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||||||||||||||| | ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||    
T  5156036 tcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatcttcaaa 5156135  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || | ||||||||||||||||| || |||||||||||||    
T  5156136 ggaggccaatgcctcactcttataaagctgaatggtggcct 5156176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5372369 - 5372229
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    ||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||    
T  5372369 tcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatcttcaaa 5372270  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || ||||||| ||||||||||| || |||||||||||||    
T  5372269 ggagactaatgcttcactcttataaagctgaatggtggcct 5372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5398318 - 5398178
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| || |||||||||||| | ||||||||||| ||  ||    
T  5398318 tcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactaccctttgcccctcttcatgttcaaa 5398219  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | ||  ||| ||||||||||||||||| |||||||||||||    
T  5398218 ggagaataacgcctcactcttatagagctgaatggtggcct 5398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 69 - 208
Target Start/End: Complemental strand, 2939186 - 2939043
Alignment:
Q  69 cttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctctt----catcttt 164  Q
    ||||||||||||| |||||||||||| |||||||  ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||    ||||||     
T  2939186 cttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgatactaccctctgcccttcttcatccatcttc 2939087  T
Q  165 gaagaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    |||| || |||||||||||||||||||||| |||||||||||||    
T  2939086 gaaggagactaatgcctcactcttatagagctgaatggtggcct 2939043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5351672 - 5351532
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||| || |||||||| ||||| |||||| |||||||  ||    
T  5351672 tctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgatactaacctctgcccctcctcatcttcaaa 5351573  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | |  ||||||||||||||||||||||  ||||||||||||    
T  5351572 ggaaactaatgcctcactcttatagagccgaatggtggcct 5351532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5098483 - 5098343
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||| ||||||||||||   ||||||||||||| || |||||||||||||||||||||||||| || ||||| ||||||||  | ||| |||||||  ||    
T  5098483 tctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattaccctctggctctcctcatcttcaaa 5098384  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || | |||||||||||||||||||| |||||||||||||    
T  5098383 ggagaccaatgcctcactcttatagagctgaatggtggcct 5098343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 5178009 - 5177873
Alignment:
Q  70 ttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaaga 169  Q
    ||||||||||||||| | ||||| ||||||| ||| |||||||||||||||| |||||||| || ||||||||| ||||  |||||||||||||  |||     
T  5178009 ttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatcttcaaagg 5177910  T
Q  170 agtctaatgcctcactcttatagagttgaatggtggc 206  Q
    || |||||||||| |||||||| || |||||||||||    
T  5177909 aggctaatgcctctctcttataaagctgaatggtggc 5177873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 70 - 206
Target Start/End: Complemental strand, 5279834 - 5279698
Alignment:
Q  70 ttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaaga 169  Q
    ||||||||||||||| | ||||| ||||||| ||| |||||||||||||||| |||||||| || ||||||||| ||||  |||||||||||||  |||     
T  5279834 ttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatcttcaaagg 5279735  T
Q  170 agtctaatgcctcactcttatagagttgaatggtggc 206  Q
    || |||||||||| |||||||| || |||||||||||    
T  5279734 aggctaatgcctctctcttataaagctgaatggtggc 5279698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5448881 - 5448741
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||||||||| || ||||||| || |||||||| ||||| |||||| | |||||  ||    
T  5448881 tcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaacctctgcccctccttatcttcaaa 5448782  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | |  |||||| |||||||||||||| ||||||||| ||||    
T  5448781 ggaaactaatgtctcactcttatagatttgaatggtagcct 5448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 5688928 - 5689064
Alignment:
Q  70 ttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaaga 169  Q
    ||||||||||||||| | ||||| |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  |||||||||||||  |||     
T  5688928 ttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatcttcaaagg 5689027  T
Q  170 agtctaatgcctcactcttatagagttgaatggtggc 206  Q
    || |||||||||| |||||||| || |||||||||||    
T  5689028 agactaatgcctcgctcttataaagctgaatggtggc 5689064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 5439274 - 5439143
Alignment:
Q  77 caatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaagtctaa 176  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||  || ||||| |||||| |||||||  ||  || |||     
T  5439274 caatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaacctctgcccctcctcatcttcaaaagagactac 5439175  T
Q  177 tgcctcactcttatagagttgaatggtggcct 208  Q
     ||||||||||||||||| |||||||||||||    
T  5439174 agcctcactcttatagagctgaatggtggcct 5439143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5100841 - 5100981
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||| ||||||||||||   ||||| ||||||| ||||||||||||||||||||| ||||||| || |||||||||||||    |||| |||||||  ||    
T  5100841 tctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctcagagcctcctcatcttcaaa 5100940  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || |||||||||| ||||||||||| |||||||||||||    
T  5100941 ggagactaatgcctcgctcttatagagctgaatggtggcct 5100981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5180797 - 5180937
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||||||||||| |||||||  | ||||||||||||||  |||||||||||||  ||    
T  5180797 tcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactaccctctgaccctcttcatcttcaaa 5180896  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
      || |||| |  |||||||||||||| |||||||| ||||    
T  5180897 agagactaacgtatcactcttatagagctgaatggtagcct 5180937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 5072705 - 5072843
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||| |||||||||||||| ||||| | |||||  || |||||||||| ||||||||| |||| || ||||||||  ||||  ||||| |||||||||||    
T  5072705 tctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttgatactaatctctcgccctcatcatctttgaa 5072804  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggc 206  Q
    | || |||||||||| |||||||| ||||||||||||||    
T  5072805 ggagactaatgcctctctcttatatagttgaatggtggc 5072843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5126652 - 5126792
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    ||||||||||||||||| | ||||  ||||||| ||| | ||| ||||||||||||| ||||| || ||||||||| |||| |||||| |||||||  ||    
T  5126652 tcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactactctctccccctcctcatcttcaaa 5126751  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || ||  |||||| |||||||||||||||||||||||||    
T  5126752 ggagactgctgcctctctcttatagagttgaatggtggcct 5126792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5242535 - 5242675
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||| || | ||||||| |||  |||||  |||||||  ||    
T  5242535 tcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactactctcagccccttctcatcttcaaa 5242634  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    |  | ||| |||||| ||||| ||||| |||||||||||||    
T  5242635 ggcggctactgcctctctcttgtagagctgaatggtggcct 5242675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5135942 - 5136082
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||| ||||||||||||   ||||| ||||||| ||||||||||||||||||||| ||||||| || |||||||||||||    |||| |||||||  ||    
T  5135942 tctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgatactaccctcagagcctcctcatcttcaaa 5136041  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | || ||||||| || ||||| ||||| |||||||||||||    
T  5136042 ggaggctaatgcttcgctcttgtagagctgaatggtggcct 5136082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 5256137 - 5256217
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctct 148  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| | || ||||| ||||||||    
T  5256137 tcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattaccctct 5256217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 5427152 - 5427032
Alignment:
Q  88 ttctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaagtctaatgcctcactct 187  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||| || | |||||| |||||||  ||  |  ||||| |||||||||    
T  5427152 ttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactactctttccccctcctcatcttcaaatgacactaatacctcactct 5427053  T
Q  188 tatagagttgaatggtggcct 208  Q
    |||| || |||||| ||||||    
T  5427052 tataaagctgaatgatggcct 5427032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5100720 - 5100790
Alignment:
Q  1 ctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 72  Q
    ||||||| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  5100720 ctttcattgattcattccactc-ggtttttcttctttctgttctgattgaagtcatcagtgggctcctcttc 5100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5398469 - 5398399
Alignment:
Q  1 ctttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 72  Q
    ||||||| ||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  5398469 ctttcattgattcattcaactc-ggcttttcttctttcttttctgattgaagtcatcagtgggctcatcttc 5398399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 5346301 - 5346161
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    ||||||||||||||||| ||||||| | |||||  || ||||||||||||||||||||||||| || |||||| || ||||  ||||| |||||||  ||    
T  5346301 tcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaactctctggccctcctcatcttcaaa 5346202  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    |  | ||| |||||| ||||| || || |||||||| ||||    
T  5346201 ggcggctactgcctctctcttgtatagctgaatggtagcct 5346161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 5352886 - 5353026
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    |||||||||| ||||||  |||||||||||||| ||| ||||| ||||||| |||||| || | || ||||||||| |||| |||||| |||||||  ||    
T  5352886 tcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgatactactctctgcccctcctcatcttcaaa 5352985  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
    | |   ||||||||| |||||||| || |||||||| ||||    
T  5352986 ggaaattaatgcctctctcttataaagctgaatggtagcct 5353026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5255975 - 5256044
Alignment:
Q  2 tttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 72  Q
    |||||| |||||||||||||| || |||||||||||||||||| |||||| |||||||||||||| |||||    
T  5255975 tttcattgattcattccactc-ggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttc 5256044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 23127335 - 23127468
Alignment:
Q  70 ttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaaga 169  Q
    |||||||||| |||| ||||||| ||||| | ||| ||||||| ||||||||||||||||  || ||||||||  |||| ||| || ||||||| |||      
T  23127335 ttcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatactaagctcttcccttcctcatcttcgaacg 23127434  T
Q  170 agtctaatgcctcactcttatagagttgaatggt 203  Q
    || |||||| ||| ||||||||||  ||||||||    
T  23127435 agactaatgtctctctcttatagatctgaatggt 23127468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 5135829 - 5135891
Alignment:
Q  9 gattcattccactcaggcttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 72  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||    
T  5135829 gattcattccactc-ggtttttcttctttctgttctgattgaagtcatcattgggctcctcttc 5135891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 205
Target Start/End: Original strand, 5065475 - 5065609
Alignment:
Q  71 tcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa 170  Q
    ||||||||| |||| | ||||| ||||||| ||| |  |||||||| || |||||||| | || ||||||||| |||| |||||| |||||||  ||| |    
T  5065475 tcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcctcatcttcaaagga 5065574  T
Q  171 gtctaatgcctcactcttatagagttgaatggtgg 205  Q
    |  ||| ||||| ||||||||||| ||||||||||    
T  5065575 gattaacgcctctctcttatagagctgaatggtgg 5065609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 5180635 - 5180686
Alignment:
Q  2 tttcatagattcattccactcaggcttttcttctttctgttctcattgaagtc 54  Q
    |||||| |||||||||||||| || |||||||||||||||||| |||||||||    
T  5180635 tttcattgattcattccactc-ggtttttcttctttctgttctgattgaagtc 5180686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 5283247 - 5283327
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctct 148  Q
    |||||||||||||||||   || || |||||||| | |||||||||||||||||| ||||| | || ||||| ||||||||    
T  5283247 tcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattaccctct 5283327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 5439421 - 5439382
Alignment:
Q  27 ttttcttctttctgttctcattgaagtcatcagtgggctc 66  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  5439421 ttttcttctttctgttccgattgaagtcatcagtgggctc 5439382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 5283100 - 5283153
Alignment:
Q  2 tttcatagattcattccactcaggcttttcttctttctgttctcattgaagtcat 56  Q
    |||||| |||||||||||||| || |||||||||||||||||| | |||||||||    
T  5283100 tttcattgattcattccactc-ggtttttcttctttctgttctgagtgaagtcat 5283153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 2657175 - 2657208
Alignment:
Q  69 cttcttcacaatgaaatcattctcgaaaacaaaa 102  Q
    ||||||||||||||||||||||||||| ||||||    
T  2657175 cttcttcacaatgaaatcattctcgaatacaaaa 2657208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 5351768 - 5351723
Alignment:
Q  27 ttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 72  Q
    |||||||||||||||||| ||| | ||||||||||||||| |||||    
T  5351768 ttttcttctttctgttctgattaaggtcatcagtgggctcctcttc 5351723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 47985419 - 47985554
Alignment:
Q  71 tcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa 170  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||| || ||||||||| |||| |||||| ||||||   ||| |    
T  47985419 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaagga 47985518  T
Q  171 gtctaatgcctcactcttatagagttgaatggtggc 206  Q
    |  ||||| |||||||||||||||||||||| ||||    
T  47985519 gattaatgtctcactcttatagagttgaatgatggc 47985554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 48003993 - 48004128
Alignment:
Q  71 tcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa 170  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||| || ||||||||| |||| |||||| ||||||   ||| |    
T  48003993 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctctccccctcctcatctccaaagga 48004092  T
Q  171 gtctaatgcctcactcttatagagttgaatggtggc 206  Q
    |  ||||| |||||||||||||||||||||| ||||    
T  48004093 gattaatgtctcactcttatagagttgaatgatggc 48004128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 47994706 - 47994841
Alignment:
Q  71 tcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa 170  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| | ||||| || ||||||||| |||| |||||| ||||||   ||| |    
T  47994706 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctctccccctcctcatctccaaagga 47994805  T
Q  171 gtctaatgcctcactcttatagagttgaatggtggc 206  Q
    |  ||||| |||||||||||||||||||||| ||||    
T  47994806 gattaatgtctcactcttatagagttgaatgatggc 47994841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 48013278 - 48013413
Alignment:
Q  71 tcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaagaa 170  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| | ||||| || ||||||||| |||| |||||| ||||||   ||| |    
T  48013278 tcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctctccccctcctcatctccaaagga 48013377  T
Q  171 gtctaatgcctcactcttatagagttgaatggtggc 206  Q
    |  ||||| |||||||||||||||||||||| ||||    
T  48013378 gattaatgtctcactcttatagagttgaatgatggc 48013413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 36212944 - 36213084
Alignment:
Q  68 tcttcttcacaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatctttgaa 167  Q
    ||||||||||||||||||  ||||| ||||||| ||| ||||||| ||| | ||||||||||| || ||||||||  |||| |||||| |||||||  ||    
T  36212944 tcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatctctgcccctcctcatcttcaaa 36213043  T
Q  168 gaagtctaatgcctcactcttatagagttgaatggtggcct 208  Q
      || |||||||||| ||||||||||  |||||||| ||||    
T  36213044 tgagactaatgcctctctcttatagatctgaatggtagcct 36213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 25569086 - 25569037
Alignment:
Q  94 aaaacaaaaacgacctccactttgttaccaggttctagacatgatactac 143  Q
    ||||||||||| |||||||||||||| |||||||||| || |||||||||    
T  25569086 aaaacaaaaacaacctccactttgtttccaggttctatacttgatactac 25569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University