View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6003_low_3 (Length: 518)
Name: NF6003_low_3
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6003_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 210 - 495
Target Start/End: Complemental strand, 1187271 - 1186985
Alignment:
| Q |
210 |
atccacttatcattcaatcatttataataaaatctgaattttaaattagctttgtatatattaaacttttttaaaaaactcgataaaaaccaactaattt |
309 |
Q |
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| T |
1187271 |
atccacttatcattcaatcatttgtaataaa-tctgaattttaaattagctttgtatatattaaacttctttaaaaaactcgataaaaatcaactaattt |
1187173 |
T |
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| Q |
310 |
gattgatctaatcccaccaaccatttgcgataacctcatttaatattagattaaagttttattcggactaacttactaaagtcggcatcagttgatcaaa |
409 |
Q |
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| T |
1187172 |
gattgatctaatctcaccaaccacttgcgataacctcatttaatattaaatcaaagttttattcggactaacttactaaagtcgacatcagttgatcaaa |
1187073 |
T |
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| Q |
410 |
cttaacaatattgtgataacactttgaagttacaaa--ttcaacattaatagattaactcacgtggttaaaccaaactataaggtaaa |
495 |
Q |
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| T |
1187072 |
cttaacaatattgtgataacactttgaagttacaaattttaaacattaatagattaactcaagtggttaaactaaactataaggtaaa |
1186985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 1187434 - 1187271
Alignment:
| Q |
17 |
aaaaagaacttgattataattattgaatgatagggcactagagtgttcgccaaatatataaacagaaactatatatcaattggagacgcgataagaaaca |
116 |
Q |
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| T |
1187434 |
aaaaagaacttgattataattattgaatgatagggcactagagtgttcgccaaatatataaccagaaactatatatcaattggagacgcgataagaaaca |
1187335 |
T |
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| Q |
117 |
atatttcaatacaattcatgattgttctnnnnnnnngacattttactccaaaattagaggtgaa |
180 |
Q |
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| T |
1187334 |
atatttcaatacaattcatgattgttctaaaaaaaagacattttactccaaaattagaggtgaa |
1187271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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