View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6003_low_5 (Length: 453)
Name: NF6003_low_5
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6003_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Complemental strand, 32634933 - 32634507
Alignment:
| Q |
13 |
aatatgagtttatcaattcggttataccatcaacaaattcagtctcactaatttcattgtctccattggcatcaagaacttgaaggaattttgtgactgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32634933 |
aatatgagtttatcaattcggttataccatcaacaaattcagtctcactaatttcattgtctccgttgacatcaagaacttgaaggaattttgtgactgc |
32634834 |
T |
|
| Q |
113 |
ttcctctgcagtcttaccaaacttaatctttttcactgcattttctaactcagatctcgaaacacttttatcgtcattgctatcaatttcctcaaataac |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32634833 |
ttcctctgcagtcttaccaaacttaatcttcttcactgcattttctaactcagatctcgaaacacttttatcgtcattgctatcaatttcctcaaagaac |
32634734 |
T |
|
| Q |
213 |
ctattgcatgattagtgccaagagaacatgcata-aaaatgtttaaaattttttgttttgtcattactagatcattaaatatttaatttaattcatatat |
311 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32634733 |
ctattgcatcattagtgccaagagaacatgcataaaaaatgtttaattttttttgttttgtcattactagatcattaaatatttgatttaattcatatat |
32634634 |
T |
|
| Q |
312 |
attgttagtgtaaaaatataaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaaccctatcactttgagca |
411 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32634633 |
attgttagtgtaaaaatataaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaaccctatcactctgagca |
32634534 |
T |
|
| Q |
412 |
tgatttaagactccagaaataagatgt |
438 |
Q |
| |
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||| ||||||||||||||||||||||| |
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| T |
32634533 |
tgacttaagactccagaaataagatgt |
32634507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 327 - 434
Target Start/End: Complemental strand, 32616251 - 32616144
Alignment:
| Q |
327 |
atataaacatgtagaccttttgatagcatctttatcaggtgtaccgtcatctttgagcagcctaccaaccctatcactttgagcatgatttaagactcca |
426 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||| ||||| | ||||||||| |||||||||| |
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| T |
32616251 |
atataaatatgcagaccttttgatagcatctttatcagctgtaccatcatcatggagcatcctaccaaccatatcattctgagcatgacttaagactccg |
32616152 |
T |
|
| Q |
427 |
gaaataag |
434 |
Q |
| |
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|||||||| |
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| T |
32616151 |
gaaataag |
32616144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 32616533 - 32616422
Alignment:
| Q |
11 |
agaatatgagtttatcaattcggttataccatcaacaaattcagtctcactaatttcattgtctccattggcatcaagaacttgaaggaattttgtgact |
110 |
Q |
| |
|
||||| |||||||||| ||| ||| | ||||||||||||||| |||||||||| ||||||||| |||||||||||| | ||||||| ||||| |||| |
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| T |
32616533 |
agaatttgagtttatccatttggtgaagccatcaacaaattcattctcactaatctcattgtctttgttggcatcaagatcgtgaaggagttttgagact |
32616434 |
T |
|
| Q |
111 |
gcttcctctgca |
122 |
Q |
| |
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|||||||||||| |
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|
| T |
32616433 |
gcttcctctgca |
32616422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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