View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6003_low_8 (Length: 284)

Name: NF6003_low_8
Description: NF6003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6003_low_8
NF6003_low_8
[»] chr4 (21 HSPs)
chr4 (76-258)||(34939340-34939522)
chr4 (78-249)||(52789328-52789499)
chr4 (78-254)||(37694495-37694671)
chr4 (78-258)||(42118898-42119078)
chr4 (91-249)||(54703570-54703728)
chr4 (78-244)||(43502268-43502434)
chr4 (78-230)||(33985432-33985584)
chr4 (78-161)||(54808987-54809070)
chr4 (78-177)||(51242815-51242914)
chr4 (93-170)||(47020077-47020154)
chr4 (95-161)||(52032702-52032768)
chr4 (95-176)||(45043009-45043090)
chr4 (117-231)||(2777925-2778038)
chr4 (95-233)||(9242920-9243057)
chr4 (183-249)||(52032771-52032837)
chr4 (141-249)||(36046938-36047046)
chr4 (112-170)||(779473-779531)
chr4 (91-136)||(36046902-36046947)
chr4 (117-227)||(49065574-49065683)
chr4 (117-175)||(42039021-42039078)
chr4 (117-249)||(13867806-13867936)
[»] chr8 (11 HSPs)
chr8 (93-254)||(4759206-4759367)
chr8 (78-258)||(1217715-1217895)
chr8 (92-249)||(35161540-35161695)
chr8 (91-266)||(9039581-9039756)
chr8 (91-249)||(4322629-4322787)
chr8 (93-237)||(5913114-5913258)
chr8 (95-258)||(42182584-42182747)
chr8 (140-245)||(15743234-15743339)
chr8 (91-143)||(15739703-15739755)
chr8 (94-150)||(23810856-23810911)
chr8 (80-153)||(34471579-34471652)
[»] chr5 (13 HSPs)
chr5 (78-245)||(1081871-1082038)
chr5 (78-249)||(18172118-18172289)
chr5 (100-237)||(2786677-2786814)
chr5 (78-234)||(12143994-12144150)
chr5 (78-170)||(7662187-7662279)
chr5 (112-249)||(40034019-40034156)
chr5 (78-211)||(43147409-43147542)
chr5 (78-249)||(34953981-34954152)
chr5 (137-246)||(1172979-1173087)
chr5 (194-266)||(24531027-24531099)
chr5 (119-233)||(16100829-16100942)
chr5 (216-249)||(7662274-7662307)
chr5 (137-233)||(11125828-11125922)
[»] chr2 (15 HSPs)
chr2 (78-249)||(5814518-5814690)
chr2 (78-249)||(1887851-1888022)
chr2 (78-245)||(41192366-41192533)
chr2 (78-258)||(4616621-4616801)
chr2 (78-249)||(21083701-21083871)
chr2 (78-200)||(34619884-34620006)
chr2 (93-256)||(5290698-5290860)
chr2 (78-245)||(32737855-32738022)
chr2 (78-260)||(6728540-6728722)
chr2 (110-245)||(2195182-2195317)
chr2 (78-212)||(37057169-37057303)
chr2 (93-199)||(26257773-26257880)
chr2 (117-243)||(29132658-29132783)
chr2 (80-212)||(29908472-29908603)
chr2 (192-240)||(30398433-30398481)
[»] chr3 (14 HSPs)
chr3 (78-260)||(49501515-49501697)
chr3 (78-227)||(49742082-49742231)
chr3 (78-225)||(41649903-41650050)
chr3 (78-227)||(23029602-23029751)
chr3 (78-170)||(2447606-2447698)
chr3 (93-177)||(49303213-49303297)
chr3 (80-212)||(48086812-48086943)
chr3 (117-228)||(6462949-6463059)
chr3 (117-228)||(6755738-6755848)
chr3 (80-177)||(25574831-25574927)
chr3 (195-240)||(36182812-36182857)
chr3 (180-249)||(53401559-53401627)
chr3 (195-240)||(36182819-36182864)
chr3 (80-225)||(39415302-39415446)
[»] chr7 (12 HSPs)
chr7 (92-249)||(4035149-4035306)
chr7 (78-258)||(39283913-39284093)
chr7 (78-200)||(14678286-14678408)
chr7 (117-253)||(8260808-8260944)
chr7 (78-161)||(3742353-3742436)
chr7 (78-177)||(37450007-37450106)
chr7 (88-177)||(40144776-40144865)
chr7 (187-255)||(33802901-33802969)
chr7 (80-177)||(18239393-18239489)
chr7 (119-177)||(30362750-30362808)
chr7 (95-177)||(41219376-41219457)
chr7 (117-177)||(27874048-27874107)
[»] chr1 (18 HSPs)
chr1 (91-245)||(12926764-12926918)
chr1 (78-234)||(33686527-33686683)
chr1 (78-233)||(7014757-7014912)
chr1 (93-244)||(10308411-10308561)
chr1 (109-244)||(22605376-22605511)
chr1 (78-233)||(43138632-43138787)
chr1 (78-254)||(1671310-1671485)
chr1 (78-232)||(30858446-30858600)
chr1 (93-170)||(49150556-49150633)
chr1 (80-177)||(41871737-41871833)
chr1 (117-229)||(5770585-5770696)
chr1 (117-225)||(21482862-21482969)
chr1 (95-170)||(15399081-15399156)
chr1 (117-212)||(3660200-3660294)
chr1 (216-258)||(15399044-15399086)
chr1 (216-266)||(49150511-49150561)
chr1 (80-177)||(48566762-48566858)
chr1 (117-177)||(49597197-49597256)
[»] chr6 (4 HSPs)
chr6 (78-245)||(11598956-11599123)
chr6 (95-245)||(30634115-30634265)
chr6 (76-258)||(3515199-3515382)
chr6 (117-211)||(23912273-23912366)
[»] scaffold0051 (1 HSPs)
scaffold0051 (78-212)||(20063-20197)
[»] scaffold0753 (1 HSPs)
scaffold0753 (95-177)||(4003-4085)
[»] scaffold0217 (1 HSPs)
scaffold0217 (95-156)||(25624-25685)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 34939340 - 34939522
Alignment:
Q  76 ctattgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataag 175  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34939340 ctattgaccaccgttcaagaaacgtttgtgctgcagtttttaccaccggccaacttgcggaagttaactcgcgcataggctcagtgttgcgtgacataag 34939439  T
Q  176 tcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34939440 tcatgcagagcttgtgaggtgcgtgtgttaagtcacgctacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 34939522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 52789499 - 52789328
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  52789499 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtc 52789400  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
      |||||| |||||||||||||||||||||| ||| ||| |||||||||||||||| | |||||||| ||||    
T  52789399 acgcagagtttgtgaggtgcgtgtgttaagtgacgctacttgacttaactcacgcaagatcatatttaaaaa 52789328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 37694495 - 37694671
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||||||| | | |||||| |||| | |||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||| ||||||    
T  37694495 attgaccatcgtcccaaaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaggttaactcgcgtagaggctcagtggtgcgtgacttaagtc 37694594  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatg 254  Q
     |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||  ||||||| ||| ||||    
T  37694595 atgcagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcaggggtatatttggaaaacatg 37694671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 42119078 - 42118898
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| | | ||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||    
T  42119078 attgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaagtc 42118979  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
      ||||| ||||||||||| ||| |||||||||||   |||||||||||||||||||||| ||||||||||| ||| ||||    
T  42118978 acgcagaacttgtgaggtgtgtgagttaagtcacgcagcgtgacttaactcacgcagggttatatttgaaaaacattcagg 42118898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 54703728 - 54703570
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgt 190  Q
    ||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||| ||| ||||||  |||||||||||    
T  54703728 caagaaacgtttgttcttcagtttttaccaccgaccaacttgcgcaagttaactcgcacataggcccagtggtgcgcgacttaagtcacgcagagcttgt 54703629  T
Q  191 gaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    ||||||||| ||||||||| || | ||| |||||||||||||||||| |||||||||||    
T  54703628 gaggtgcgtatgttaagtctcgctgcgttacttaactcacgcagggttatatttgaaaa 54703570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 78 - 244
Target Start/End: Original strand, 43502268 - 43502434
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  43502268 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaagtc 43502367  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatattt 244  Q
      |||||||||||||||||||  |||||| || || | ||| ||||||||| ||||| || ||||||    
T  43502368 acgcagagcttgtgaggtgcgcatgttaaatctcgctgcgttacttaactcgcgcagagttatattt 43502434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 33985432 - 33985584
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||    
T  33985432 attgaccaccgtccaagaaacgtttgtgcttcagtttttactaccggccaacttgcgcaagttaactcgcgcagaggctttgtgttgcgtgacttaagtc 33985531  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcac 230  Q
      |||||| |||||||||||||| |||||  |||| | |||||||||||||||    
T  33985532 acgcagagtttgtgaggtgcgtgagttaaaccacgttgcgtgacttaactcac 33985584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 54808987 - 54809070
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtg 161  Q
    |||||| | ||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54808987 attgactaccgtccaagaaatgtttgtggttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtg 54809070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 51242914 - 51242815
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||| |||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||    
T  51242914 attgactaccgtccaaaaaacgtttatgcttcagttttgaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgtgtcacataagtc 51242815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 47020154 - 47020077
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    |||||||||| || | ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  47020154 agaaacgtttttgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcgtgac 47020077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 52032702 - 52032768
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtg 161  Q
    ||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52032702 aaacgtttgtgctttagtttttaccaccggccaatttgcgcaagttaactcgcgcataggctcagtg 52032768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 45043009 - 45043090
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagt 176  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||||||||| |  | |||||||||| |||||||| |||||    
T  45043009 aaacgtttgtgcttcagtttttaccaccggccaacttacgcaagttaactcacatagaggctcagtggtgcgtgacttaagt 45043090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 2778038 - 2777925
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||||||||  |||||||||||||| |||| |||||  | ||||| |||||   ||||| ||| | ||||||||| ||||||||||| | |    
T  2778038 accaccggccaacttgcgtgagttaactcgcgcacaggc-cagtggcgtgtgacttaagttacgcagaacttataaggtgcgtgagttaagtcacgctgc 2777940  T
Q  217 gtgacttaactcacg 231  Q
    |||||||||||||||    
T  2777939 gtgacttaactcacg 2777925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 9242920 - 9243057
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgagg 194  Q
    ||||||||||  | ||||| | || |||||||||||||||  |||||||||||| | |||||||||| |||||||| ||||||  |||||| || | |||    
T  9242920 aaacgtttgttcttcagttctgactaccggccaacttgcgtgagttaactcgcgga-aggctcagtggtgcgtgacttaagtcacgcagagattataagg 9243018  T
Q  195 tgcgtgtgttaagtcacggtacgtgacttaactcacgca 233  Q
    || ||| |||||||||||    |||||||||||||||||    
T  9243019 tgtgtgagttaagtcacgtagtgtgacttaactcacgca 9243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 52032771 - 52032837
Alignment:
Q  183 gagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    |||||| ||||||||||| |||||||| || | |||||||||||||||||||||||| |||||||||    
T  52032771 gagcttatgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggtcaaatttgaaaa 52032837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 36046938 - 36047046
Alignment:
Q  141 aactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcat 240  Q
    |||| |||||||||||||||| |||| ||| ||||||  ||| |||||||||||||    ||||||||| || | ||| |||||||||||||||||| ||    
T  36046938 aacttgcgcataggctcagtggtgcgcgacttaagtcacgcaaagcttgtgaggtgtacatgttaagtctcgctgcgttacttaactcacgcagggttat 36047037  T
Q  241 atttgaaaa 249  Q
    ||| |||||    
T  36047038 attcgaaaa 36047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 779473 - 779531
Alignment:
Q  112 tttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||||||  ||||||||    
T  779473 tttttaccaccggccaacttgcgcaagttaacttgcgaagaggctcagttgtgcgtgac 779531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 36046902 - 36046947
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgca 136  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36046902 caagaaacgtttgtgtttcagtttttaccaccgaccaacttgcgca 36046947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 49065574 - 49065683
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||  ||||  ||||||||||||||||||| ||||| |||||||| ||||||  ||| || || | |||||||   |||||||||||  ||    
T  49065574 accaccggccaaggtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcacgcatagtttataaggtgcgctagttaagtcacgcaac 49065672  T
Q  217 gtgacttaact 227  Q
    |||||||||||    
T  49065673 gtgacttaact 49065683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 42039078 - 42039021
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataag 175  Q
    ||||||||||||| ||||  |||||||||||||| |||| ||||| |||||||||||||    
T  42039078 accaccggccaacgtgcgtgagttaactcgcgcacaggc-cagtggtgcgtgacataag 42039021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 13867806 - 13867936
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    |||| |||||||||||||  ||||| ||||||||  |||| |||| |||||||| |||||| ||| |||| | | |||||| || |||||||||||   |    
T  13867806 accatcggccaacttgcgtgagttagctcgcgcaccggct-agtggtgcgtgacttaagtcatgctgagc-tattaggtgcatgagttaagtcacgcagc 13867903  T
Q  217 gtgacttaactcacgcagggtcatatttgaaaa 249  Q
    ||||||| |||||| || ||  |||||||||||    
T  13867904 gtgactttactcacacaagggtatatttgaaaa 13867936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 93 - 254
Target Start/End: Original strand, 4759206 - 4759367
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtga 192  Q
    ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| ||||||  |||||||||||||    
T  4759206 agaaacgtttgtgcttcagtttttaccaccgtccaacttgcgcaagttaactcgcgcagaggctcagtggtgcatgacttaagtcacgcagagcttgtga 4759305  T
Q  193 ggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatg 254  Q
    |||||||||||||||||||| | |||||||||||| ||||||||| ||||||||||| ||||    
T  4759306 ggtgcgtgtgttaagtcacgttgcgtgacttaacttacgcagggttatatttgaaaaacatg 4759367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 1217895 - 1217715
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||    
T  1217895 attgaccaccgtcccagaaacgtttgtgtttcagtttttaccaccggccaacttgcgcaagtcaactcgcgcagaggctcggtggtgcgtgacttaagtc 1217796  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
       || ||||||||||||||||| |||||||||||  |||||||||||||||| |||||| ||||||| ||| ||||||||    
T  1217795 acacaaagcttgtgaggtgcgtgagttaagtcacgcaacgtgacttaactcacacagggttatatttggaaaacatgcagg 1217715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 35161695 - 35161540
Alignment:
Q  92 aagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtg 191  Q
    |||||||||||||| | ||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  35161695 aagaaacgtttgtgcttcagtttt-accaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgac-taagtcacgcagagcttgtg 35161598  T
Q  192 aggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    ||||| |||||||||||| || | | |||||||||||||||| ||| |||||| ||||    
T  35161597 aggtgggtgtgttaagtctcgctgcatgacttaactcacgcatggttatatttaaaaa 35161540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 91 - 266
Target Start/End: Complemental strand, 9039756 - 9039581
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgt 190  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| ||||||  ||| || ||||    
T  9039756 caagaaacgtttgtgctgtagtttttaccaccggccaacttgcgcaagttaactcgcgcagaggttcagtggtgtgtgacttaagtcacgcaaaggttgt 9039657  T
Q  191 gaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcaggacacgagc 266  Q
    |||||||||| |||||| |||| | |||| ||||||||||||| | | |||||| |||| ||| |||||| |||||    
T  9039656 gaggtgcgtgagttaaggcacgctgcgtggcttaactcacgcacgattatatttaaaaaacattcaggacgcgagc 9039581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 4322787 - 4322629
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgt 190  Q
    |||||||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||   ||||| |||||    
T  4322787 caagaaacatttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacctaagttacgcagaacttgt 4322688  T
Q  191 gaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    |||||||||| |||||||| || | ||||| ||||||||| |||| | |||||| ||||    
T  4322687 gaggtgcgtgagttaagtctcgctgcgtgagttaactcacacaggattatatttaaaaa 4322629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 93 - 237
Target Start/End: Original strand, 5913114 - 5913258
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtga 192  Q
    ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| || ||||||| || || ||||| ||||||  |||||||||||||    
T  5913114 agaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcacagaggctcaatggtgtgtgacttaagtcacgcagagcttgtga 5913213  T
Q  193 ggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggt 237  Q
    |||||||| |||||||||||    |||||||||||||||||||||    
T  5913214 ggtgcgtgagttaagtcacgcggtgtgacttaactcacgcagggt 5913258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 258
Target Start/End: Complemental strand, 42182747 - 42182584
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgagg 194  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||| || |||  | ||||||||||||     
T  42182747 aaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagagactcagtggtgcgtgacttaggtcacgtagagcttgtgaga 42182648  T
Q  195 tgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
    |||||| |||||||||||    ||||||||||||||||||| | ||||||| ||| ||||||||    
T  42182647 tgcgtgagttaagtcacgcagtgtgacttaactcacgcaggattatatttggaaaacatgcagg 42182584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 15743234 - 15743339
Alignment:
Q  140 taactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtca 239  Q
    |||||||||||||||||||||| |||||||| ||||||  ||||||||||||||||||||| ||||||||  | | ||||||||||||||| |||| | |    
T  15743234 taactcgcgcataggctcagtggtgcgtgacttaagtcacgcagagcttgtgaggtgcgtgagttaagtcttgctgcgtgacttaactcacacaggatta 15743333  T
Q  240 tatttg 245  Q
    ||||||    
T  15743334 tatttg 15743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 15739703 - 15739755
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaac 143  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  15739703 caagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaac 15739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 23810856 - 23810911
Alignment:
Q  94 gaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgca 150  Q
    |||||||||||| | ||||||| ||||||| ||||||||||||||||||||| ||||    
T  23810856 gaaacgtttgtgcttcagtttt-accaccgtccaacttgcgcaagttaactcacgca 23810911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 34471579 - 34471652
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcatag 153  Q
    |||||| ||| ||| ||||||||||  | ||||| | ||||||||||||| ||||  |||||||||||||||||    
T  34471579 tgaccaccgtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcgtgagttaactcgcgcatag 34471652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 1081871 - 1082038
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  1081871 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtc 1081970  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
      ||||||||||||||||||||| |||||||| || | ||||||||||||||| |||||||| |||||    
T  1081971 acgcagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacacagggtcaaatttg 1082038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 18172118 - 18172289
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||||    
T  18172118 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcgcgcataagctcagtggtgcgtgacttaagtc 18172217  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
      ||||||||||||| ||||||||||||||| ||  | |||||||||||||||||| |||||||||| ||||    
T  18172218 acgcagagcttgtgatgtgcgtgtgttaagtgacactgcgtgacttaactcacgcaaggtcatatttaaaaa 18172289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 2786814 - 2786677
Alignment:
Q  100 tttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgt 199  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||  ||||||||||||||||||||    
T  2786814 tttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcacgcagagcttgtgaggtgcgt 2786715  T
Q  200 gtgttaagtcacggtacgtgacttaactcacgcagggt 237  Q
    | |||||||| || | || |||||||||||||||||||    
T  2786714 gagttaagtctcgttgcgcgacttaactcacgcagggt 2786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 234
Target Start/End: Complemental strand, 12144150 - 12143994
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||| ||| | |||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  12144150 attgactaccgtccaagaaacgtttgtgcttcagtttttaacactgaccaacttgcgcaagttaactcgtgcataggctcagtggtgcgtgacttaagtc 12144051  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcag 234  Q
      ||| ||||||||||||||||| |||||||| || | |||||||||||||||||||    
T  12144050 acgcaaagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 12143994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 7662187 - 7662279
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    |||||| | ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  7662187 attgactaccgttcaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaaatcgcgcataggctcagtggtgcgtgac 7662279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 40034019 - 40034156
Alignment:
Q  112 tttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcac 211  Q
    |||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||| ||||||  ||||   |||| |||||| || ||||||||||    
T  40034019 tttttaccaccgaccaacttgcgcgagttaactcgcgtagaggctcagtggtgcgtgacttaagtctcgcagtaattgtaaggtgcatgagttaagtcac 40034118  T
Q  212 ggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    | | |||||||||||||| ||||||| |||||||||||    
T  40034119 gatgcgtgacttaactcatgcagggttatatttgaaaa 40034156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 43147409 - 43147542
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||||||||||| |||  ||||| || ||||||||||||||||||||||||||| |||||||||| | | |||||||||| |||||||| ||||||    
T  43147409 attgaccatcgttcaaaaaatatttgtttttcagtttttaccaccggccaacttgcgcgagttaactcgtgtagaggctcagtggtgcgtgacttaagtc 43147508  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcac 211  Q
      |||||| ||||||| |||||  ||||||||||    
T  43147509 acgcagagtttgtgagatgcgttagttaagtcac 43147542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 34954152 - 34953981
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||  ||| ||||||    
T  34954152 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccagccaacttgtgcaagttaactcgcgcataggctcagtggtgcacgacttaagtc 34954053  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
      ||| || ||||||||||||  ||||||||   | | | | |||||||||||| |||||  ||||||||||    
T  34954052 acgcatagattgtgaggtgcgcatgttaagtgttgctgcattacttaactcacgtagggttgtatttgaaaa 34953981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 1172979 - 1173087
Alignment:
Q  137 agttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcaggg 236  Q
    |||||||| |||||||||| ||||| ||||| || ||||||  |||||| || | |||||||  |||||||||||| | |||||||||||| ||||| ||    
T  1172979 agttaactggcgcataggc-cagtggtgcgtaacttaagtcacgcagaggttataaggtgcgcttgttaagtcacgctgcgtgacttaactaacgcaagg 1173077  T
Q  237 tcatatttga 246  Q
     |||||||||    
T  1173078 gcatatttga 1173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 24531027 - 24531099
Alignment:
Q  194 gtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcaggacacgagc 266  Q
    ||||||| ||||||||||  | |||||||||||||||||||||  ||||||| ||||||||| |||| |||||    
T  24531027 gtgcgtgagttaagtcacactgcgtgacttaactcacgcaggggtatatttggaaatcatgctggacgcgagc 24531099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 16100942 - 16100829
Alignment:
Q  119 caccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgt 218  Q
    ||||||||||||||||  |||||||||||||| ||||  | || |||||||| ||||||  ||||  ||| | ||||||||| |||||| ||||   | |    
T  16100942 caccggccaacttgcgtgagttaactcgcgcacaggc-aaatggtgcgtgacttaagtcacgcaggacttataaggtgcgtgagttaagccacgtcgcat 16100844  T
Q  219 gacttaactcacgca 233  Q
    |||||||||||||||    
T  16100843 gacttaactcacgca 16100829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 7662274 - 7662307
Alignment:
Q  216 cgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    |||||||||||||||||| |||||||||||||||    
T  7662274 cgtgacttaactcacgcaaggtcatatttgaaaa 7662307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 11125828 - 11125922
Alignment:
Q  137 agttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgca 233  Q
    |||||||||||||| | || ||||| ||| |||| ||||||  ||||||||  | ||||||||| ||||||||||| | |||||||||||| |||||    
T  11125828 agttaactcgcgcacatgc-cagtgatgcatgacttaagtcacgcagagcta-taaggtgcgtgagttaagtcacgttgcgtgacttaactaacgca 11125922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 249
Target Start/End: Original strand, 5814518 - 5814690
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacat-aagt 176  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| | ||||    
T  5814518 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtataggctcagtagtgcgtgacttaaagt 5814617  T
Q  177 cgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    |  ||||||||||||||||||||| |||||||| || | |||||||||||||||||||||| |||||||||||    
T  5814618 cacgcagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttgaaaa 5814690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 1888022 - 1887851
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| | |||||   ||||||| ||||||    
T  1888022 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgggcaacttgcgcaagttaactcgcgcatatgatcagttgggcgtgacttaagtc 1887923  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
      ||||||||||||||||||||||||||||| ||| | |||||||||||||||||| | |||||||||||||    
T  1887922 acgcagagcttgtgaggtgcgtgtgttaagtgacgttgcgtgacttaactcacgcaagatcatatttgaaaa 1887851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 41192366 - 41192533
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||    
T  41192366 attgactaccgtccaagaaacgtttgtgctttagtttttaccaccggccaacttgcgcaagttaactcgcacataggctcagtggtgtgtgacttaagtc 41192465  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
       |||||||||||||||||||| |||||||| || | |||||||||||||||||||||| |||||||    
T  41192466 acacagagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttg 41192533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 4616621 - 4616801
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| | | ||||||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||  ||||||| ||||||    
T  4616621 attgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggggcgtgacttaagtc 4616720  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
      ||||||||||||| ||||||| ||||||||||    ||||||||||||||| || ||| ||||||||||| ||||||||    
T  4616721 acgcagagcttgtgaagtgcgtgagttaagtcacacagcgtgacttaactcacacatggttatatttgaaaaacatgcagg 4616801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 249
Target Start/End: Complemental strand, 21083871 - 21083701
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||| |||||||||  |  ||||| ||||||    
T  21083871 attgactaccgtccaagaaacgtttgtgcttcagtttt-accaccggccaacttgcgcaagttaacttgcgcagaggctcagttgtaagtgacttaagtc 21083773  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
      |||||||||||||| |||||| |||||||| |  | |||||||||||||||||||||| |||||||||||    
T  21083772 acgcagagcttgtgagatgcgtgagttaagtctcactgcgtgacttaactcacgcagggttatatttgaaaa 21083701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 34619884 - 34620006
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||||  |||||||| ||||||    
T  34619884 attgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaacttgtgcaagttaactcgcgcataggctcagtagtgcgtgacttaagtc 34619983  T
Q  178 gtgcagagcttgtgaggtgcgtg 200  Q
      |||||||||||||||||||||    
T  34619984 acgcagagcttgtgaggtgcgtg 34620006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 5290698 - 5290860
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtga 192  Q
    |||||||| |||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||  |||||||||| ||    
T  5290698 agaaacgtctgtgtttcagtttttaccaccgtccaacttgcgcgagttaactcacgcataggctcagtggtgcgtgacttaagtcacgcagagcttgaga 5290797  T
Q  193 ggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgca 256  Q
    ||| | || ||||||||||    ||||||||||| |||||| ||| ||||| ||||| ||||||    
T  5290798 ggtacatgagttaagtcacacagcgtgacttaacccacgca-ggttatattcgaaaaacatgca 5290860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 245
Target Start/End: Original strand, 32737855 - 32738022
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||    
T  32737855 attgactaccgtccaagaaacgtttgtgcttcagtttttaccatcggccaacttgcgcaagttaactcacgcagaggctcagtggtgcgtgacttaagtc 32737954  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
      ||| | ||| | |||||||| | |||||||||| |  ||||||||||| ||||| || ||||||||    
T  32737955 acgcacaacttataaggtgcgtttattaagtcacgctgtgtgacttaactaacgcaagggcatatttg 32738022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 78 - 260
Target Start/End: Complemental strand, 6728722 - 6728540
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| |||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | | ||||||    
T  6728722 attgactaccgtccaagaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcacggcttaagtc 6728623  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcaggac 260  Q
       || || ||||||||||||  ||||||||   | | ||| |||||||||| ||||||| ||||||| |||  |||||||||    
T  6728622 acacatagattgtgaggtgcgcatgttaagtgttgttgcgttacttaactcaagcagggttatatttggaaaaaatgcaggac 6728540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 245
Target Start/End: Original strand, 2195182 - 2195317
Alignment:
Q  110 agtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtc 209  Q
    ||||||||||| |||| ||||||||| |||||||||| | | | | |||||| |||| ||| ||| |||||||||||||||||||| |||| ||||||||    
T  2195182 agtttttaccatcggctaacttgcgcgagttaactcgggtagatgatcagtggtgcgagacttaaatcgtgcagagcttgtgaggtacgtgagttaagtc 2195281  T
Q  210 acggtacgtgacttaactcacgcagggtcatatttg 245  Q
    ||| | ||||  ||||||||||||| || |||||||    
T  2195282 acgttgcgtgtgttaactcacgcagagttatatttg 2195317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 37057303 - 37057169
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| | | ||||||||||| | ||||||||||||||  | |||||||  ||||||||||||| | || || |||| |||||||| ||||||    
T  37057303 attgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccaactaacttgcataagttaactcgcgtaaagacttagtggtgcgtgacttaagtc 37057204  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacg 212  Q
      ||||||||||||||||||||| |||||||||||    
T  37057203 acgcagagcttgtgaggtgcgtgagttaagtcacg 37057169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 26257773 - 26257880
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagt-gttgcgtgacataagtcgtgcagagcttgtg 191  Q
    ||||||||||||| | ||||||||||||||| | |||||||||||||||||| ||||| ||||||||| | || ||||| ||||||  |||||| |||||    
T  26257773 agaaacgtttgtgcttcagtttttaccaccgtctaacttgcgcaagttaacttgcgcagaggctcagtggatgtgtgacttaagtcacgcagagtttgtg 26257872  T
Q  192 aggtgcgt 199  Q
    ||||||||    
T  26257873 aggtgcgt 26257880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 243
Target Start/End: Original strand, 29132658 - 29132783
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||| ||||  ||||||||||||||||||| | ||| |||||||| ||||||  | ||| ||| | ||||||||  ||||||||||| | |    
T  29132658 accaccggccaacgtgcgtgagttaactcgcgcataggc-cggtggtgcgtgacttaagtcacgtagaacttataaggtgcgttagttaagtcacgttgc 29132756  T
Q  217 gtgacttaactcacgcagggtcatatt 243  Q
    ||||||||||| |||||||| ||||||    
T  29132757 gtgacttaactaacgcaggggcatatt 29132783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 29908603 - 29908472
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgt 179  Q
    |||||| ||| ||| ||||||||||  | ||||| | ||||||||||||| |||   ||||||||||||||||||| |||||  ||||||| ||||||      
T  29908603 tgaccaccgtccaaaaaacgtttgttcttcagttctaaccaccggccaacgtgcatgagttaactcgcgcataggc-cagtggcgcgtgacttaagtcac 29908505  T
Q  180 gcagagcttgtgaggtgcgtgtgttaagtcacg 212  Q
    |||||| || | |||||||   |||||||||||    
T  29908504 gcagaggttataaggtgcgcaagttaagtcacg 29908472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 30398433 - 30398481
Alignment:
Q  192 aggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcat 240  Q
    ||||| ||| |||||||||||  || |||||||||||||||||||||||    
T  30398433 aggtgtgtgagttaagtcacgcaacatgacttaactcacgcagggtcat 30398481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 78 - 260
Target Start/End: Original strand, 49501515 - 49501697
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||| ||||||    
T  49501515 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagttaactcacgcataagctcagtggtgcgtgacttaagtc 49501614  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcaggac 260  Q
      ||||||||||||||||||||| |||||||| || |  ||||||||||||||||||||| ||||||| |||  |||||||||    
T  49501615 acgcagagcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactcacgcagggttatatttggaaaaaatgcaggac 49501697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 49742082 - 49742231
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| || || ||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  49742082 attgactattgtccaagaaacgtttgtgcttcagtttctaccaccgggcaacttgcgcaagttaactcgcgcatagactcagtggtgcgtgacttaagtc 49742181  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaact 227  Q
      ||||||||||||||||||||| ||||||||||| | ||||||||||||    
T  49742182 acgcagagcttgtgaggtgcgtgagttaagtcacgctgcgtgacttaact 49742231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 41650050 - 41649903
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| |||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||    
T  41650050 attgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaaattaactcgcgcataggctcagtagtgcgtgacttaagtc 41649951  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaa 225  Q
       |||||||||||||||| ||| ||||| || || | ||||||||||    
T  41649950 acacagagcttgtgaggtgtgtgagttaaatctcgctgcgtgacttaa 41649903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 23029751 - 23029602
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| |||||||||||| |||| |||||| ||||||||||||||| | |||||||||||| ||||||||||||||| ||| |||| ||||||    
T  23029751 attgactaccgtccaagaaacgtttctgtttcagtttctaccaccggccaactagggcaagttaactcccgcataggctcagtggtgcatgacttaagtc 23029652  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaact 227  Q
      ||| ||||| |||| |||||| ||||||||||| | ||||||||||||    
T  23029651 acgcaaagcttatgagatgcgtgagttaagtcacgctgcgtgacttaact 23029602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 2447698 - 2447606
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||    
T  2447698 attgactaccgtccaagaaacgtttgtgcttcagtttttaccactggccaacttgcgccagttaactcgcgcataggcttagtgttgcgtgac 2447606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 49303297 - 49303213
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |||||||||| || ||||| ||||||    
T  49303297 agaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagttaactcgcgcagaggctcagtggtgtgtgacttaagtc 49303213  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 48086943 - 48086812
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgt 179  Q
    |||||| ||| ||| ||||||||||    ||||| | ||||||||||||| ||||  ||||||||||||||||||| ||||| |||||||| |||||| |    
T  48086943 tgaccaccgtccaaaaaacgtttgttagtcagttctgaccaccggccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtcat 48086845  T
Q  180 gcagagcttgtgaggtgcgtgtgttaagtcacg 212  Q
    |||||| || | |||||||   |||||||||||    
T  48086844 gcagaggttataaggtgcgcaagttaagtcacg 48086812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 228
Target Start/End: Complemental strand, 6463059 - 6462949
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||||||||  ||||||||| | || | || ||||| |||||||| ||||||   || ||||| | ||||||||| |||||||||||  ||    
T  6463059 accaccggccaacttgcgtgagttaactcacacacatgc-cagtggtgcgtgacttaagtcacacaaagcttataaggtgcgtgagttaagtcacgcaac 6462961  T
Q  217 gtgacttaactc 228  Q
    ||||||||||||    
T  6462960 gtgacttaactc 6462949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 6755738 - 6755848
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||||||||  |||||||||||||| | || ||||| || ||||| ||||||   || ||||| | ||||||||| |||||||||||   |    
T  6755738 accaccggccaacttgcgtgagttaactcgcgcacatgc-cagtggtgtgtgacttaagtcacacaaagcttataaggtgcgtgagttaagtcacgcagc 6755836  T
Q  217 gtgacttaactc 228  Q
    ||||||||||||    
T  6755837 gtgacttaactc 6755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 25574927 - 25574831
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| ||| ||| ||||||||||  | ||||| | ||||||| ||||| ||||  ||||||||||||||||||| ||||| |||||||| ||||||    
T  25574927 tgaccaccgtccaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtc 25574831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 36182857 - 36182812
Alignment:
Q  195 tgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcat 240  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||    
T  36182857 tgcgtgagttaagtcacgctgcgtgacttaactcacgcagggtcat 36182812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 53401559 - 53401627
Alignment:
Q  180 gcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    ||||||||| ||||||||||| |||||||| || | ||| |||||||||||||| ||||| |||||||||    
T  53401559 gcagagcttatgaggtgcgtgagttaagtctcgctgcgtaacttaactcacgca-ggtcaaatttgaaaa 53401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 36182819 - 36182864
Alignment:
Q  195 tgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcat 240  Q
    |||||| |||||||||||   |||||||||||||||||||||||||    
T  36182819 tgcgtgagttaagtcacgcagcgtgacttaactcacgcagggtcat 36182864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 225
Target Start/End: Complemental strand, 39415446 - 39415302
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgt 179  Q
    |||||| ||| ||| ||||||||||  | ||||| | |||| |||||||| ||||  ||||||||| |||| |||| ||||| |||||||| ||||||      
T  39415446 tgaccaccgtccaaaaaacgtttgttcttcagttctaaccatcggccaacgtgcgtgagttaactcacgcacaggc-cagtggtgcgtgacttaagtcac 39415348  T
Q  180 gcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaa 225  Q
    |||||| || | |||||||   |||||||||||   ||||||||||    
T  39415347 gcagaggttataaggtgcgcaagttaagtcacgcagcgtgacttaa 39415302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 4035149 - 4035306
Alignment:
Q  92 aagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtg 191  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||| | |||||    
T  4035149 aagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtcacgcagggattgtg 4035248  T
Q  192 aggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaa 249  Q
    |||||| || |||||||| || | |||||||||||||||||||||| |||||||||||    
T  4035249 aggtgcatgagttaagtctcgctgcgtgacttaactcacgcagggttatatttgaaaa 4035306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 39284093 - 39283913
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| | | ||||||||||| | ||||||||||||||| ||||||||||||| |||||||||| | |||||||||| |||||||| ||||||    
T  39284093 attgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaaattaactcgcgtagaggctcagtggtgcgtgacttaagtc 39283994  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
      ||||||||| ||||||||||| |||||| |||| | |||||||||||||||||| ||| ||||||  ||| ||||||||    
T  39283993 acgcagagcttatgaggtgcgtgagttaagccacgctgcgtgacttaactcacgcatggttatattttgaaaacatgcagg 39283913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 14678408 - 14678286
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |||||||||| |||||||| ||||||    
T  14678408 attgaccaccgtccaagaaacgtttgtgctgcagtttttaccaccggccaacttgcgcaagttaactcacacagaggctcagtggtgcgtgacttaagtc 14678309  T
Q  178 gtgcagagcttgtgaggtgcgtg 200  Q
      | |||| ||||||||||||||    
T  14678308 acgtagaggttgtgaggtgcgtg 14678286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 253
Target Start/End: Complemental strand, 8260944 - 8260808
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||||||||||  |||||||||||||| |||||||||| |||||||| ||||||  |||||| || | |||||| || |||||||||||   |    
T  8260944 accaccggccaacttgcgtgagttaactcgcgcaaaggctcagtggtgcgtgacttaagtcacgcagagattataaggtgcatgagttaagtcacgcagc 8260845  T
Q  217 gtgacttaactcacgcagggtcatatttgaaaatcat 253  Q
    |||||||||||||||||||   |||||||||||||||    
T  8260844 gtgacttaactcacgcaggtgtatatttgaaaatcat 8260808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 3742353 - 3742436
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtg 161  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3742353 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgcataggctcagtg 3742436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 37450106 - 37450007
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| ||||||    
T  37450106 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagttaactcgtgcataggctcagtgatgcgcgacttaagtc 37450007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 40144776 - 40144865
Alignment:
Q  88 gttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| ||||| |||| ||||| ||||||| |||||||| ||||||    
T  40144776 gttcaaggaacgtttgtgcttcagtttttaccaccggccaacttgcgcaggttaagtcgcacatagactcagtggtgcgtgacttaagtc 40144865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 33802969 - 33802901
Alignment:
Q  187 ttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatgc 255  Q
    |||| ||||||||| ||||||||||| | |||||||||||||||||||||  |||||||||||||||||    
T  33802969 ttgtaaggtgcgtgagttaagtcacgctgcgtgacttaactcacgcaggggtatatttgaaaatcatgc 33802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 18239393 - 18239489
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| ||||||| ||||||||||  | ||||| | ||||||| ||||| ||||  ||||||||||||||||||| || || |||||||| ||||||    
T  18239393 tgaccaccgttcaaaaaacgtttgttcttcagttctgaccaccgaccaacgtgcgttagttaactcgcgcataggc-cattgatgcgtgacttaagtc 18239489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 30362750 - 30362808
Alignment:
Q  119 caccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||| |||||| |||| |||||||||||||  |||||||||| |||||||| ||||||    
T  30362750 caccgaccaactagcgcgagttaactcgcgctaaggctcagtggtgcgtgacttaagtc 30362808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 41219376 - 41219457
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||||||  | ||||| | |||||| |||||| ||||  ||||||||||||||||||| ||||| |||||||| ||||||    
T  41219376 aaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggc-cagtgatgcgtgacttaagtc 41219457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 27874048 - 27874107
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||||||||| ||||  |||||||||||||||||| |||||| |||||| | ||||||    
T  27874048 accaccggccaacgtgcgtgagttaactcgcgcatagg-tcagtggtgcgtggcttaagtc 27874107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 12926918 - 12926764
Alignment:
Q  91 caagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgt 190  Q
    ||||||||||||||| | ||||||||||||   |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||||    
T  12926918 caagaaacgtttgtgcttcagtttttaccattagccaacttgcgcaagttaactcgcgcataggctcagtggtgcatgacttaagtcgcgcagagcttgt 12926819  T
Q  191 gaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
    ||||||| || |||||||| || | |||||||||||||||||||||| |||||||    
T  12926818 gaggtgcatgagttaagtctcgctgcgtgacttaactcacgcagggttatatttg 12926764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 78 - 234
Target Start/End: Original strand, 33686527 - 33686683
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| |||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  33686527 attgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttacgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtc 33686626  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcag 234  Q
      ||| ||||||||||||||||| |||||||| || | |||||||||||||||||||    
T  33686627 acgcaaagcttgtgaggtgcgtgagttaagtctcgctgcgtgacttaactcacgcag 33686683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 7014757 - 7014912
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||    
T  7014757 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcatatgcttagtggtgcgtgacttaagtc 7014856  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgca 233  Q
      | ||||||||||||||||||| |||||||| || |  |||||||||||||||||    
T  7014857 acgtagagcttgtgaggtgcgtgagttaagtctcgctgtgtgacttaactcacgca 7014912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 10308561 - 10308411
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtga 192  Q
    ||||| ||||||| | |||| |||||||||||||||||||||||||||||||| |||| | || ||||| |||||||| ||||||   || |||||||||    
T  10308561 agaaatgtttgtgcttcagtgtttaccaccggccaacttgcgcaagttaactcacgcacatgc-cagtggtgcgtgacttaagtcacacaaagcttgtga 10308463  T
Q  193 ggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatattt 244  Q
    |||||||| |||||||| || | |||||||||||||||||||||| ||||||    
T  10308462 ggtgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatattt 10308411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 22605511 - 22605376
Alignment:
Q  109 cagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagt 208  Q
    ||||||||||||||||| |||||||||||||||||||| | | ||||||| || |||||||| ||||||  | |||||||||||||||||||  ||||||    
T  22605511 cagtttttaccaccggctaacttgcgcaagttaactcgtgtagaggctcaatggtgcgtgacttaagtcacgtagagcttgtgaggtgcgtgacttaagt 22605412  T
Q  209 cacggtacgtgacttaactcacgcagggtcatattt 244  Q
    |||| | || ||||||||||||| ||||| ||||||    
T  22605411 cacgctgcgcgacttaactcacgtagggttatattt 22605376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 233
Target Start/End: Original strand, 43138632 - 43138787
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||| ||    
T  43138632 attgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaatttgcgcaagttaactcgcgcataggctcagtggtgcgcgacttaaatc 43138731  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgca 233  Q
      |||||||||||||||| ||  | ||||||| |  ||| | ||||||||||||||    
T  43138732 acgcagagcttgtgaggtacgcatattaagtctcactacattacttaactcacgca 43138787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 254
Target Start/End: Original strand, 1671310 - 1671485
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||||| ||| ||| ||||||||||  | ||||||| ||||||| ||||||||||   ||||||||||||| |||||||||| | |||||| ||||||    
T  1671310 attgaccaccgtccaa-aaacgtttgttcttcagttttgaccaccgaccaacttgcgtgcgttaactcgcgcagaggctcagtggttcgtgacttaagtc 1671408  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttgaaaatcatg 254  Q
     |||| | ||||| |||||||||  |||||||||| | ||||||||||||||  ||| |  ||||||||||||||||    
T  1671409 ctgcaaaacttgtaaggtgcgtgaattaagtcacgctgcgtgacttaactcatacagaggtatatttgaaaatcatg 1671485  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 30858600 - 30858446
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||||||||  || ||||||||||  | ||| ||| ||||||||||||||||||| |||||||||||| | ||||||| || |   |||| ||||||    
T  30858600 attgaccatcgtctaaaaaacgtttgttcttcagctttgaccaccggccaacttgcgcgagttaactcgcgtagaggctcaatggtttatgacttaagtc 30858501  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgc 232  Q
       |||||||||| ||||||||| ||||||||||| | | |||||||||||||||    
T  30858500 acacagagcttgtaaggtgcgtgagttaagtcacgctgcatgacttaactcacgc 30858446  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 49150633 - 49150556
Alignment:
Q  93 agaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    |||||||||| || |  ||||||||||||||||||| |||||||||| ||| |||||| |||||||||| ||||||||    
T  49150633 agaaacgtttatgcttaagtttttaccaccggccaatttgcgcaagtcaacgcgcgcagaggctcagtggtgcgtgac 49150556  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 41871833 - 41871737
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| ||| ||| ||||||||||  | ||||| ||||||||||||||| ||||  ||||||||||||||||||| ||||| ||||| || ||||||    
T  41871833 tgaccaccgtccaaaaaacgtttgttcttcagttcttaccaccggccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgttacttaagtc 41871737  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 5770585 - 5770696
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    ||||||||||| ||||||  ||||| |||||||| |||| ||||| |||||||| |||| |  ||| ||||| | ||||||||| |||||||||||   |    
T  5770585 accaccggccaccttgcgtgagttagctcgcgcacaggc-cagtggtgcgtgacttaagccacgcaaagcttataaggtgcgtgagttaagtcacgcagc 5770683  T
Q  217 gtgacttaactca 229  Q
    |||||||||||||    
T  5770684 gtgacttaactca 5770696  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 21482969 - 21482862
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtac 216  Q
    |||| |||||||| ||||  |||||||||| ||||||||| |||| |||||||| ||||||  ||||||||| | ||||| ||  ||||||||||| | |    
T  21482969 accatcggccaacgtgcgtgagttaactcgtgcataggct-agtggtgcgtgacttaagtcacgcagagcttataaggtgtgttagttaagtcacgctgc 21482871  T
Q  217 gtgacttaa 225  Q
    |||||||||    
T  21482870 gtgacttaa 21482862  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 15399156 - 15399081
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgac 170  Q
    ||||||||||| | || |||||||||||  |||||||||| ||||||||||||||| || ||| ||| ||||||||    
T  15399156 aaacgtttgtgcttcaatttttaccaccatccaacttgcgtaagttaactcgcgcagagactcggtggtgcgtgac 15399081  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 3660200 - 3660294
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcacg 212  Q
    ||||||||||||  ||||  ||||||||||||||||||| || || |||||||| ||||||  ||||||||| | |||||||   |||||||||||    
T  3660200 accaccggccaaggtgcgtgagttaactcgcgcataggc-caatggtgcgtgacttaagtcacgcagagcttataaggtgcgctagttaagtcacg 3660294  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 15399086 - 15399044
Alignment:
Q  216 cgtgacttaactcacgcagggtcatatttgaaaatcatgcagg 258  Q
    |||||||||||||||||||| | ||||||||||| ||||||||    
T  15399086 cgtgacttaactcacgcaggattatatttgaaaaacatgcagg 15399044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 49150561 - 49150511
Alignment:
Q  216 cgtgacttaactcacgcagggtcatatttgaaaatcatgcaggacacgagc 266  Q
    ||||||||||||||| |||||| ||||||| ||| |||||||||| |||||    
T  49150561 cgtgacttaactcacacagggttatatttggaaaacatgcaggacgcgagc 49150511  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 48566858 - 48566762
Alignment:
Q  80 tgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| ||| ||| ||||||||||  | ||||| | |||||| |||||| ||||  ||||||||||||||||||| ||||  |||||||| ||||||    
T  48566858 tgaccaccgtccaaaaaacgtttgttcttcagttctgaccaccagccaacgtgcgtgagttaactcgcgcataggc-cagtaatgcgtgacttaagtc 48566762  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 49597256 - 49597197
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||| ||||| ||||  ||||||||||||||||||| ||||| |||||||| ||||||    
T  49597256 accaccgaccaacgtgcgtgagttaactcgcgcataggc-cagtggtgcgtgacttaagtc 49597197  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 245
Target Start/End: Complemental strand, 11599123 - 11598956
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||    
T  11599123 attgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcggtggtgcatgacttaagtc 11599024  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
      ||||||||||||||||||||| |||||||| ||    |||| |||||||||||||||| |||||||    
T  11599023 acgcagagcttgtgaggtgcgtgagttaagtctcgcggtgtgagttaactcacgcagggttatatttg 11598956  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 30634115 - 30634265
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgagg 194  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||| ||||||  | |||||||||||||    
T  30634115 aaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagttaactcacgtagaggctcagtggtgcgtgacttaagtcacgtagagcttgtgagg 30634214  T
Q  195 tgcgtgtgttaagtcacggtacgtgacttaactcacgcagggtcatatttg 245  Q
    |||||| |||||||| || | |||||||||||||||||||||| |||||||    
T  30634215 tgcgtgagttaagtctcgctgcgtgacttaactcacgcagggttatatttg 30634265  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 258
Target Start/End: Original strand, 3515199 - 3515382
Alignment:
Q  76 ctattgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataag 175  Q
    |||||||||| ||| | | ||||||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||    
T  3515199 ctattgaccaccgtccgaaaaacgtttgtgctacagtttttaccaccggccaacttgcgcaagttaactcgcgtagaggctcagtggtgcgtgacttaag 3515298  T
Q  176 tcgtgcagagcttgtgaggtgcgtgtgttaagtcacggtacgtgactt-aactcacgcagggtcatatttgaaaatcatgcagg 258  Q
    ||  ||| ||||||||| ||||||| ||||||||||  |  ||||||| ||||||  |||||| ||||||| ||| ||||||||    
T  3515299 tcacgcaaagcttgtgaagtgcgtgagttaagtcacactgtgtgacttaaactcaaacagggttatatttggaaaacatgcagg 3515382  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 23912273 - 23912366
Alignment:
Q  117 accaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtcgtgcagagcttgtgaggtgcgtgtgttaagtcac 211  Q
    ||||||||||||||||||  | |||||||||||| | || ||||| ||| |||| ||||||  ||||||||| | ||||||||| ||||||||||    
T  23912273 accaccggccaacttgcgtgaattaactcgcgcacatgc-cagtggtgcatgacttaagtcacgcagagcttataaggtgcgtgagttaagtcac 23912366  T

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Target: scaffold0051 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 212
Target Start/End: Complemental strand, 20197 - 20063
Alignment:
Q  78 attgaccatcgttcaagaaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    |||||| | ||| ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20197 attgactaccgtccaagaaacgtttgtgcttcaatttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtggtgcgtgacttaagtc 20098  T
Q  178 gtgcagagcttgtgaggtgcgtgtgttaagtcacg 212  Q
      ||| ||||||||||||||||| ||||| |||||    
T  20097 acgcaaagcttgtgaggtgcgtgagttaactcacg 20063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 4085 - 4003
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggctcagtgttgcgtgacataagtc 177  Q
    ||||||||||  | ||||| | |||||||| |||||||||  |||||||||||| | |||||||||| |||||||| ||||||    
T  4085 aaacgtttgttcttcagttctgaccaccggtcaacttgcgtgagttaactcgcggaaaggctcagtggtgcgtgacttaagtc 4003  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 25685 - 25624
Alignment:
Q  95 aaacgtttgtgttgcagtttttaccaccggccaacttgcgcaagttaactcgcgcataggct 156  Q
    ||||||||||  | ||||| | ||||||||||||||||||  |||||||||||||| |||||    
T  25685 aaacgtttgttcttcagttctgaccaccggccaacttgcgtgagttaactcgcgcaaaggct 25624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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