View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6004_low_1 (Length: 286)
Name: NF6004_low_1
Description: NF6004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6004_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 46502119 - 46502188
Alignment:
| Q |
1 |
acttaatcctcaaagacttttgaaccaaaaactcatggatatgt-ggtaataaagcatattagatctcat |
69 |
Q |
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| T |
46502119 |
acttaatcctcaaagacttttgaaccaaaaactcatggatatgtgggtaataaagcatattagatctcat |
46502188 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 46502237 - 46502292
Alignment:
| Q |
118 |
tattaaccattaatgaggttttgatttgaaattgtaggagaatatgaatctcattt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46502237 |
tattaaccattaatgaggttttgatttgaaattgtaggagaatatgaatctcattt |
46502292 |
T |
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