View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6005_high_1 (Length: 297)
Name: NF6005_high_1
Description: NF6005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6005_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 9070825 - 9071107
Alignment:
| Q |
1 |
caagtgtcgtttcctaactgaagagcagttgaagaagaacattttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatc |
100 |
Q |
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| T |
9070825 |
caagtgttgtttcctaactgaaaagcagttgaagaagaagattttgatatccagttcagaatcaaaccggtaaggtcgaaatgatgaattgttgagtatc |
9070924 |
T |
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| Q |
101 |
aaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagagg |
200 |
Q |
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| T |
9070925 |
aaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagagg |
9071024 |
T |
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| Q |
201 |
tagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgat |
286 |
Q |
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| T |
9071025 |
tagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacaca---ttgatcttgtgatgat |
9071107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 252
Target Start/End: Original strand, 8862754 - 8862938
Alignment:
| Q |
68 |
cggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgacatcgagtgtgattcgtagtcaatat |
167 |
Q |
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| T |
8862754 |
cggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactgaaattcggtttgattcgtagtctatgt |
8862853 |
T |
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| Q |
168 |
cagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactc |
252 |
Q |
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| T |
8862854 |
aatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatataggcaaaactc |
8862938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 9087308 - 9087410
Alignment:
| Q |
178 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct |
277 |
Q |
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| T |
9087308 |
gaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacaca---ttgatct |
9087401 |
T |
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| Q |
278 |
tgtgatgat |
286 |
Q |
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| T |
9087402 |
tgtgatgat |
9087410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9108990 - 9109116
Alignment:
| Q |
1 |
caagtgtcgtttcctaactgaagagcagttgaagaagaacattttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatc |
100 |
Q |
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|||||| |||||| ||||||||||||||||| ||||| | ||| | |||| | ||| |||| ||| | ||||||| |||||||||| ||||||| || |
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| T |
9108990 |
caagtgccgtttcttaactgaagagcagttggagaaggaaattattatatttgattctgaataaaatctgtaaggtcaaaatgatgaactgttgagcat- |
9109088 |
T |
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| Q |
101 |
aaaaacttttttggaaggcaattgtctg |
128 |
Q |
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|||||| ||||| ||||||||||||||| |
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| T |
9109089 |
aaaaacattttttgaaggcaattgtctg |
9109116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 8866730 - 8866818
Alignment:
| Q |
178 |
gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacatt |
269 |
Q |
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|||| ||| ||||||||||| |||||| | || |||||||| ||||| |||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
8866730 |
gaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatataggcaaaactc---aggataaacacatt |
8866818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 9126271 - 9126305
Alignment:
| Q |
4 |
gtgtcgtttcctaactgaagagcagttgaagaaga |
38 |
Q |
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| T |
9126271 |
gtgtcgtttcctaaccgaagagcagttgaagaaga |
9126305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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