View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6006_high_13 (Length: 372)
Name: NF6006_high_13
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 39333118 - 39333413
Alignment:
| Q |
13 |
aatattttgtccttgtgattttaaaagaaatgcttttgaaatacactgatttctttgcttctcctccnnnnnnnngttcattggatgatgtcagagttgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39333118 |
aatattttgtccttgtgattttaaaagaaatgcttttgaaatacactgatttctttgcttctcctccttttttttgttcattggatgatgtcagagttgg |
39333217 |
T |
|
| Q |
113 |
aattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39333218 |
aattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcatg |
39333317 |
T |
|
| Q |
213 |
gttaatatagtagaggtaaagtactaaaatttgaaaatagtactaacttgctatgtgattttttatattgaaggggattctaactaaacattttgg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39333318 |
gttaatatagtagaggtaaagtactaaaatttgaaaatagtactaacttgctatgtgattttttatattgaaggggattctaactaaacattttgg |
39333413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 88 - 308
Target Start/End: Original strand, 39359030 - 39359250
Alignment:
| Q |
88 |
gttcattggatgatgtcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatc |
187 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||| | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
39359030 |
gttcattggatgaaatcagagttggaattgatcttcctacgatagaggttcgatttgagcgtttgaatatcaatgcagaagctcgtgtaggaagcagatc |
39359129 |
T |
|
| Q |
188 |
tttgcctaccttcactaacttcatagttaatatagtagaggtaaagtactaaaatttgaaaatagtactaacttgctatgtgattttttatattgaaggg |
287 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39359130 |
tttgcctaccttcactaacttcatggttaatatagtagaggtaaagtactaaaatttgaaaataatactaacttgctatgtgattttttatattgaaggg |
39359229 |
T |
|
| Q |
288 |
gattctaactaaacattttgg |
308 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39359230 |
gattctaactaaacattttgg |
39359250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 96 - 308
Target Start/End: Original strand, 39344470 - 39344684
Alignment:
| Q |
96 |
gatgatgtcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgccta |
195 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
39344470 |
gatgatatcagagttggaattgatcttcctaccatagaggttcgattcgagcatttgaatatcgaagcagaagctcatgtaggaagcatatctttgccta |
39344569 |
T |
|
| Q |
196 |
ccttcactaacttcatagttaatatagtagaggtaaagtactaaaatttgaaaatagtactaacttgctatgtga--ttttttatattgaaggggattct |
293 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39344570 |
ccttcactaacttcatggttaatatagtagaggtaaagtactaaaatttgaaaatagtactaacttgctatgtgattttttttatattgaaggggattct |
39344669 |
T |
|
| Q |
294 |
aactaaacattttgg |
308 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39344670 |
aactaaacattttgg |
39344684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 39569417 - 39569136
Alignment:
| Q |
20 |
tgtccttgtgattttaaaagaaatgcttttgaaatacactgatttctttgcttctcctccnnnnnnnngttcattggatgatgtcagagttggaattgat |
119 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| | | | ||||||||||| |||||||||||||| ||||| |
|
|
| T |
39569417 |
tgtccttgtggttttaaaagaagtgcttttgaaatacactgatttctttgcttaccgttcctttttt-gttcattggataatgtcagagttggagttgat |
39569319 |
T |
|
| Q |
120 |
cttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcatagttaata |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39569318 |
cttcctacaatagaagttcgattcgaacacctgaatatcgaagcagaagctcgtgtaggaagcagatctttgcctaccttcactaacttcatggttaata |
39569219 |
T |
|
| Q |
220 |
tagtagaggtaaagtactaaaatttga-aaatagtactaacttgctatgtgattttttatattgaaggggattctaactaaacattttgg |
308 |
Q |
| |
|
||||||||||||| || | || | | | ||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
39569218 |
tagtagaggtaaa-taatcaactatcataaatagtacta----gctatgtgatgttt--tgttgaaggggattctaactaaacattttgg |
39569136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 39543282 - 39543141
Alignment:
| Q |
95 |
ggatgatgtcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcct |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
39543282 |
ggatgatatcagagttggaattgatcttcctacgatagaggttcgattcgagcacctgaatatcgaagcagaagctaatgtaggaagcaggtctttgcct |
39543183 |
T |
|
| Q |
195 |
accttcactaacttcatagttaatatagtagaggtaaagtac |
236 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
39543182 |
accttcactaacttcatggttaatatagtactggtaaagtac |
39543141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 39552509 - 39552302
Alignment:
| Q |
93 |
ttggatgatgtcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgc |
192 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| | | ||||| ||||||||||||| |||||||| || ||||||| |
|
|
| T |
39552509 |
ttggatgatatcagagtaggaattgatcttcctacaatagaggttcgattcgagggcttgaatatcgaagcagaagctcatgtaggaaataggtctttgc |
39552410 |
T |
|
| Q |
193 |
ctaccttcactaacttcatagttaatatagtagaggtaaagtactaaaatttga-aaatagtactaacttgctatgtgattttttatattgaaggggatt |
291 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| || | || | ||| ||||||||||||||| ||||||| | ||| |||||||||| ||| |
|
|
| T |
39552409 |
ctaccttcactaacttcatggttaatatagtggaggtaaa-taatcaactctgataaatagtactaactttctatgtggtattt--tattgaagggtatt |
39552313 |
T |
|
| Q |
292 |
ctaactaaaca |
302 |
Q |
| |
|
||||||||||| |
|
|
| T |
39552312 |
ctaactaaaca |
39552302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 39578878 - 39578776
Alignment:
| Q |
103 |
tcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctaccttcac |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||||| |||||| | ||||| || ||||||| || ||||||| ||| ||||||||||| |||| |
|
|
| T |
39578878 |
tcagagttggaattaatcttcctacaatcgaagtccgatttgagcacttgaatatcgaggcagaagttcacgtaggaaaaagagctttgcctaccctcac |
39578779 |
T |
|
| Q |
203 |
taa |
205 |
Q |
| |
|
||| |
|
|
| T |
39578778 |
taa |
39578776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 39584701 - 39584608
Alignment:
| Q |
104 |
cagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcagatctttgcctacc |
197 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| ||||| ||||| | || || |||||||||| || ||||||| ||| ||||||||||| |
|
|
| T |
39584701 |
cagagttggaattaatcttcctacaatcgaagtccgatttcagcacttgaagatcgaagcagaagttcacgtaggaaaaagagctttgcctacc |
39584608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 49768852 - 49768933
Alignment:
| Q |
103 |
tcagagttggaattgatcttcctacaatagaagttcgattcgagcacctcaatattgaagcagaagctcgtgtaggaagcag |
184 |
Q |
| |
|
|||| |||||| ||||| |||| ||||| ||||| || || |||||| | ||| ||||||||||||||| ||| |||||||| |
|
|
| T |
49768852 |
tcagggttggacttgattttccgacaattgaagtccgttttgagcacttgaatgttgaagcagaagctcatgtgggaagcag |
49768933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University