View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_high_2 (Length: 790)
Name: NF6006_high_2
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 464 - 773
Target Start/End: Original strand, 11227252 - 11227561
Alignment:
| Q |
464 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatgtcaatgaagaagaacaagaacct |
563 |
Q |
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| T |
11227252 |
tttttgtgagcaaactgtggagaacatagaagacttgcaattactgcaagaagatgacaatgaacaagagccaaatatcaatgaagaagaacaagaacct |
11227351 |
T |
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| Q |
564 |
gatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgct |
663 |
Q |
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| T |
11227352 |
gatgagccagagccaaatcttgatgaatatcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgct |
11227451 |
T |
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| Q |
664 |
tttctaataagctataagtcatagtttattgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctgtttatcgta |
763 |
Q |
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| T |
11227452 |
tttctaataagctataagtcatagtttattgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctgtttatcata |
11227551 |
T |
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| Q |
764 |
tgatatattt |
773 |
Q |
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| T |
11227552 |
tgatatattt |
11227561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 111 - 403
Target Start/End: Original strand, 11226960 - 11227252
Alignment:
| Q |
111 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata |
210 |
Q |
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| T |
11226960 |
tcaagtgatgagatgtattatgggaaattggttgacatcatagaacttgattactatggtaagctgagggttgtgcttttcaagtgtgtttgggtagata |
11227059 |
T |
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| Q |
211 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctcgcttgatacacactggtgtgaatgaagtagatgaaccatt |
310 |
Q |
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| T |
11227060 |
ctagacctaacaagggaattaagattgatcaatttggaataccaagtgtgaatttctctagcttgatacacactggtgtgaatgaagtagatgaaccatt |
11227159 |
T |
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| Q |
311 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
403 |
Q |
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| T |
11227160 |
catccttgcaactgatgctagaatggtatattatgttgatgatccatttgaagaaggttggtcttgtgtaagtcatatgaagcctagagacat |
11227252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 639 - 747
Target Start/End: Original strand, 10128093 - 10128203
Alignment:
| Q |
639 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtactattt |
736 |
Q |
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| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtactattt |
10128192 |
T |
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| Q |
737 |
ttcttatatat |
747 |
Q |
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| T |
10128193 |
ttcttatatat |
10128203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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