View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6006_high_26 (Length: 251)

Name: NF6006_high_26
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6006_high_26
NF6006_high_26
[»] chr7 (8 HSPs)
chr7 (1-248)||(39552618-39552865)
chr7 (1-248)||(39569456-39569703)
chr7 (1-248)||(39344106-39344353)
chr7 (1-248)||(39332836-39333083)
chr7 (1-248)||(39358682-39358929)
chr7 (1-248)||(39543395-39543642)
chr7 (127-198)||(39585472-39585543)
chr7 (127-195)||(39579142-39579210)
[»] chr4 (2 HSPs)
chr4 (131-203)||(2882142-2882214)
chr4 (150-203)||(2871849-2871902)
[»] chr8 (1 HSPs)
chr8 (158-195)||(4494209-4494246)
[»] chr2 (3 HSPs)
chr2 (150-203)||(44215153-44215206)
chr2 (170-203)||(44238464-44238497)
chr2 (169-203)||(44227330-44227364)
[»] chr1 (1 HSPs)
chr1 (152-201)||(2166851-2166900)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39552618 - 39552865
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||    
T  39552618 tttgagcaaaaacttttcattgtcttcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaaggttctcaacatcgatctca 39552717  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39552718 gtggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 39552817  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    |||||||||||||||||||||| |||||||| ||||| ||| ||||||    
T  39552818 cttggtggaaagaatttgaaaagatctcagcagcatcactgttcctcc 39552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39569456 - 39569703
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  39569456 tttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttctttcttgcagcccaagcttctcaatatcaatctca 39569555  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39569556 acggcttccccttgaagtgaagtgagcaaacctttcctcaaacgcgcaaaagtaggaagattctgaattgcagcccacttaagagcttcttcatcatctt 39569655  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  39569656 cttggtgaaaagaatttgaaaaaatctcagctgcatcactgctcctcc 39569703  T

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Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39344353 - 39344106
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| | |||     
T  39344353 tttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagcaaatcttttcttacttgcaacccaagcttctcaacatcaacctcg 39344254  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39344253 gtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 39344154  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    ||||||| ||||||||||||||||||| ||| ||||| ||| ||||||    
T  39344153 cttggtgaaaagaatttgaaaaaatctgagcagcatcactgttcctcc 39344106  T

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Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39333083 - 39332836
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| ||||||||||| |||||     
T  39333083 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatctttcttttcttgcatcccaaggttctcaacatcaatctcg 39332984  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
    |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||     
T  39332983 atggttccaccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaaggatctgaattgcagcccatttaagagcttcttcatcatctc 39332884  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  39332883 cttggtggaaagaatttgaaaaaatctcggctgcatcactgttcctcc 39332836  T

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Target: chr7; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 39358929 - 39358682
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| | |||     
T  39358929 tttgagcagaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcaacctcg 39358830  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  39358829 gtggcttccccttgaagtgaagtaagcaaacctttcctcaaacgttcaaaagtaggaagcttctgaattgcagcccatttaagagattcttcatcatctt 39358730  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    ||||||| |||||||||||||| |||||||| ||||| ||| ||||||    
T  39358729 cttggtgaaaagaatttgaaaagatctcagcagcatcactgttcctcc 39358682  T

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Target: chr7; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 39543395 - 39543642
Alignment:
Q  1 tttgagcagaaacttttcattgtcctcttcagcaagtctaacaagtctttcgagcaaatcttttctttcttgcagcccaagcttctcaacatcgatctca 100  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||    
T  39543395 tttgagcaaaaacttctcattgtcctcttcagcaagtctaacaagtctttcaagtaaatcttttctttcttgcaacccaagcttctcaacatcgatctca 39543494  T
Q  101 atggcttccccttgaagtgaagtgagcaaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatctt 200  Q
     ||||||||||||| ||  ||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39543495 gtggcttccccttgcagcaaagagagcaaacctttccttaaacgtgcaaaagtaggaagtttctgaatggcagcccatttaagagcttcttcatcatctt 39543594  T
Q  201 cttggtggaaagaatttgaaaaaatctcagctgcatctctgctcctcc 248  Q
    ||||| | |||||||| |||||||||||||| ||||| ||| ||||||    
T  39543595 cttggcgaaaagaattagaaaaaatctcagcagcatcactgttcctcc 39543642  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 39585472 - 39585543
Alignment:
Q  127 caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatc 198  Q
    ||||||| ||||||| ||| ||| ||| |||||  ||||||||||||||||||| | ||| |||||||||||    
T  39585472 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatcatc 39585543  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 39579142 - 39579210
Alignment:
Q  127 caaacctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatc 195  Q
    ||||||| ||||||| ||| ||| ||| |||||  ||||||||||||||||||| | ||| ||||||||    
T  39579142 caaacctctcctcaagcgtgcaacagtcggaagcctctgaattgcagcccatttcaaagcctcttcatc 39579210  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 2882214 - 2882142
Alignment:
Q  131 cctttcctcaaacgttcaaaagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 203  Q
    |||||||||||||| | | ||||||| ||||| | || |||||||||||||||||||||||||||||| ||||    
T  2882214 cctttcctcaaacggttataagtagggagtttttcaagtgcagcccatttaagagcttcttcatcatcatctt 2882142  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 2871902 - 2871849
Alignment:
Q  150 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 203  Q
    ||||||| ||||| | ||||||||||||||| || |||||||||||||||||||    
T  2871902 aagtagggagtttttcaattgcagcccatttgagggcttcttcatcatcttctt 2871849  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 4494246 - 4494209
Alignment:
Q  158 agtttctgaattgcagcccatttaagagcttcttcatc 195  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4494246 agtttctcaattgcagcccatttaagagcttcttcatc 4494209  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 44215153 - 44215206
Alignment:
Q  150 aagtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttctt 203  Q
    ||||||| ||||| | || |||||||||||| ||||||||||||||||||||||    
T  44215153 aagtaggtagtttttcaagtgcagcccatttgagagcttcttcatcatcttctt 44215206  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 44238464 - 44238497
Alignment:
Q  170 gcagcccatttaagagcttcttcatcatcttctt 203  Q
    ||||||||||||||||||||||||||||||||||    
T  44238464 gcagcccatttaagagcttcttcatcatcttctt 44238497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 44227330 - 44227364
Alignment:
Q  169 tgcagcccatttaagagcttcttcatcatcttctt 203  Q
    |||||||||||| ||||||||||||||||||||||    
T  44227330 tgcagcccatttgagagcttcttcatcatcttctt 44227364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 2166851 - 2166900
Alignment:
Q  152 gtaggaagtttctgaattgcagcccatttaagagcttcttcatcatcttc 201  Q
    ||||||||| ||| ||| |||||||||||||||||||||||||| |||||    
T  2166851 gtaggaagtctctcaatagcagcccatttaagagcttcttcatcgtcttc 2166900  T

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