View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_high_6 (Length: 461)
Name: NF6006_high_6
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 16922852 - 16922411
Alignment:
| Q |
1 |
aagtaatttgtatttcatttgttatactgaaatacttatttttgtttactcttcaagctacaaactataaattaaagtacactttctaagtcaactaagt |
100 |
Q |
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| T |
16922852 |
aagtaatttgtatttcatttgttatactgaaatacttatttttgttaactcttcaagctacaaactataaattaaagtacactttctaagtcaactaagt |
16922753 |
T |
|
| Q |
101 |
agacttacaaggtcaactaagacannnnnnnnagtatttggggttttattaatgatgaattagaaggnnnnnnnacgttgttttcaatcatcatatgatc |
200 |
Q |
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| T |
16922752 |
agacttacaaggtcaactaagacagtttttttagtatttggggtttgattaatgatgaattagaaggtttttttacgttgttttcaatcatcatatgatc |
16922653 |
T |
|
| Q |
201 |
tttccaactaaaatgtcctttttggtttgataattggaaacaaggttgaaaacttttgattttcatatcattctcaccaaaccaaataagaaaaatctct |
300 |
Q |
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| T |
16922652 |
tttccaactaaaatgtcctttttggtttgataattggaaacaaggttgaaaacttttgattttcatatcattctcaccaaaccaaataagaaaaatctct |
16922553 |
T |
|
| Q |
301 |
ctttagctgccctaaaaatctacttaaatcggttagtttttaagcttaaaaatgtaacgaaaccatgtacattagcttaacaaactaaataaacttactt |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16922552 |
ctttagctgccttaaaaatctacttaaatcggttagtttttaagcttaaaaatgtaacgaaaccatgtagattagcttaacaaactaaataaacttactt |
16922453 |
T |
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| Q |
401 |
ggatattatttggtaccaacaatgaaaatctaatgtttatta |
442 |
Q |
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| T |
16922452 |
ggatattatttggtaccaacaatgaaaatctaatgtttatta |
16922411 |
T |
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