View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_17 (Length: 340)
Name: NF6006_low_17
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_17 |
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| [»] scaffold0477 (2 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 85 - 337
Target Start/End: Complemental strand, 699 - 447
Alignment:
| Q |
85 |
ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagta |
184 |
Q |
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| T |
699 |
ggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagca |
600 |
T |
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| Q |
185 |
gtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagt |
284 |
Q |
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| T |
599 |
gtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagt |
500 |
T |
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| Q |
285 |
tatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
337 |
Q |
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| T |
499 |
tatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 780 - 724
Alignment:
| Q |
7 |
tagataatactagagttttactgtcacgacaaagaaaa--caatagtaactcttcac |
61 |
Q |
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| T |
780 |
tagataatactagagttttactgtcaagacaaaaaaaaacaaatagtaactcttcac |
724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 85 - 337
Target Start/End: Complemental strand, 4649682 - 4649430
Alignment:
| Q |
85 |
ggtgatcatattttagatcatcttccaagtatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagta |
184 |
Q |
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| T |
4649682 |
ggtgatcatattttagatcatcttccaagcatattgatgtaaattaataccttagacaattgacaagtgaaataaagacattttgtttggtggtaaagca |
4649583 |
T |
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| Q |
185 |
gtagtttttggtggagatttcagacagattttgcttgtaattcccaaaggtattagacaagaagttgtcattctattattaattcatcctatctttgagt |
284 |
Q |
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|| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4649582 |
gtggtttttgatggagatttcagacagattttgccgataattcccaaaggtattagacaagaagttgtcattctactattaattcatcctatctttgagt |
4649483 |
T |
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| Q |
285 |
tatgatttgccgatatcacgaaacatgaatggtgatgcaattgatgatgtcca |
337 |
Q |
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| T |
4649482 |
tatgatttgccgttatcacgaaacatgaatggtgatgcaattgatgatgtcca |
4649430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 4649763 - 4649707
Alignment:
| Q |
7 |
tagataatactagagttttactgtcacgacaaagaaaa--caatagtaactcttcac |
61 |
Q |
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|||||||||||||||||||||||||| |||||| |||| |||||||||||||||| |
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| T |
4649763 |
tagataatactagagttttactgtcaagacaaaaaaaaacaaatagtaactcttcac |
4649707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 47400155 - 47400095
Alignment:
| Q |
153 |
gaaataaagacattttgtttggtggtaaagtagtagtttttggtggagatttcagacagat |
213 |
Q |
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| T |
47400155 |
gaaataaaaacattccatttggtggtaaagttgtggtttttggtggtgacttcagacagat |
47400095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 9825372 - 9825404
Alignment:
| Q |
186 |
tagtttttggtggagatttcagacagattttgc |
218 |
Q |
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| T |
9825372 |
tagtttttggtggagattttagacagattttgc |
9825404 |
T |
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