View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6006_low_19 (Length: 321)

Name: NF6006_low_19
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6006_low_19
NF6006_low_19
[»] chr6 (7 HSPs)
chr6 (114-301)||(9550824-9551004)
chr6 (8-113)||(13697654-13697759)
chr6 (10-113)||(3118046-3118150)
chr6 (8-112)||(14023020-14023124)
chr6 (8-113)||(3986905-3987010)
chr6 (8-113)||(24208530-24208635)
chr6 (10-113)||(15345659-15345762)
[»] chr5 (11 HSPs)
chr5 (10-113)||(31800646-31800749)
chr5 (8-117)||(39371013-39371123)
chr5 (8-73)||(1815656-1815721)
chr5 (8-115)||(2237362-2237470)
chr5 (8-113)||(14831630-14831736)
chr5 (8-113)||(40887941-40888047)
chr5 (10-113)||(13347216-13347320)
chr5 (36-110)||(27553376-27553450)
chr5 (8-113)||(42683685-42683791)
chr5 (8-58)||(9408094-9408144)
chr5 (8-56)||(17225403-17225451)
[»] chr8 (9 HSPs)
chr8 (8-113)||(18184639-18184744)
chr8 (8-115)||(10203750-10203858)
chr8 (8-113)||(30432425-30432530)
chr8 (8-113)||(36189302-36189406)
chr8 (8-105)||(44081866-44081964)
chr8 (15-113)||(12665438-12665537)
chr8 (10-113)||(43186115-43186218)
chr8 (8-113)||(42162684-42162790)
chr8 (8-113)||(31318891-31318997)
[»] chr4 (9 HSPs)
chr4 (8-113)||(44275792-44275897)
chr4 (8-113)||(7217851-7217957)
chr4 (8-115)||(21390953-21391060)
chr4 (15-111)||(35545005-35545102)
chr4 (8-113)||(6112716-6112821)
chr4 (7-113)||(28093095-28093202)
chr4 (22-113)||(49243915-49244006)
chr4 (8-113)||(3672360-3672466)
chr4 (38-115)||(52191198-52191275)
[»] chr7 (20 HSPs)
chr7 (8-113)||(34108512-34108618)
chr7 (8-115)||(36346562-36346669)
chr7 (8-113)||(45782659-45782765)
chr7 (8-114)||(7699881-7699988)
chr7 (8-114)||(7700079-7700186)
chr7 (8-114)||(7700277-7700384)
chr7 (8-114)||(7700475-7700582)
chr7 (7-113)||(26972202-26972309)
chr7 (8-113)||(34828151-34828256)
chr7 (8-113)||(28307494-28307600)
chr7 (8-113)||(46475110-46475216)
chr7 (8-113)||(5811163-5811268)
chr7 (8-113)||(31148376-31148481)
chr7 (8-111)||(30887786-30887890)
chr7 (15-113)||(42220963-42221061)
chr7 (16-113)||(13108241-13108338)
chr7 (20-113)||(29953571-29953665)
chr7 (8-113)||(23980217-23980322)
chr7 (8-63)||(36957515-36957570)
chr7 (8-61)||(21807374-21807427)
[»] chr1 (6 HSPs)
chr1 (12-113)||(34307137-34307239)
chr1 (8-111)||(39249864-39249968)
chr1 (10-113)||(28647441-28647544)
chr1 (8-111)||(19258674-19258777)
chr1 (8-113)||(2509110-2509216)
chr1 (8-113)||(46901734-46901840)
[»] chr3 (13 HSPs)
chr3 (8-113)||(51339783-51339888)
chr3 (8-115)||(46111941-46112049)
chr3 (14-113)||(29472901-29473000)
chr3 (8-113)||(21559647-21559753)
chr3 (15-113)||(30735495-30735594)
chr3 (8-113)||(39467101-39467206)
chr3 (8-113)||(34749897-34750003)
chr3 (8-111)||(36749492-36749596)
chr3 (8-63)||(36370388-36370443)
chr3 (8-113)||(44000075-44000181)
chr3 (8-113)||(48200771-48200877)
chr3 (41-115)||(39072276-39072350)
chr3 (8-112)||(22894766-22894870)
[»] chr2 (8 HSPs)
chr2 (8-113)||(33732655-33732760)
chr2 (8-110)||(3830900-3831002)
chr2 (20-113)||(37498862-37498956)
chr2 (21-113)||(16089920-16090012)
chr2 (8-113)||(44958199-44958305)
chr2 (8-63)||(14573081-14573136)
chr2 (8-113)||(6376238-6376343)
chr2 (12-115)||(41188859-41188963)
[»] scaffold0043 (1 HSPs)
scaffold0043 (28-113)||(87162-87247)
[»] scaffold0062 (1 HSPs)
scaffold0062 (8-120)||(6804-6917)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 9550824 - 9551004
Alignment:
Q  114 atgttaaaattatctctgaagtcttatttgatgagtttacctactaccattatggtccactcgattctaacctctataatttgactttcaccattctcaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9550824 atgttaaaattatctctgaagtcttatttgatgagtttacctactaccattatggtccactcgattctaacctctataatttgactttcaccattctcaa 9550923  T
Q  214 attcttcttcaaaactcaaaatacaagtgtatatagtcattttctgttgcattctaaataatttgatgatgtgctatcttattgatac 301  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9550924 attcttct-------tcaaaatacaagtgtatatagtcattttctgttgcattctaaataatttgatgatgtgctatcttattgatac 9551004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 13697654 - 13697759
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||| || |||||| |||  ||| |||||||| | | | |||||||||    
T  13697654 agagatgaaaacgggtgatgatatgatataaaattactaaaatatctctaacacatggggtgtacataagtaatgtatgaaaaatgatctctacctatct 13697753  T
Q  108 ttttcc 113  Q
    ||||||    
T  13697754 ttttcc 13697759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 3118150 - 3118046
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattgga-tgtacacaagagatgcatgaaaaagggtgtttacctatctt 108  Q
    |||| |||| ||||| ||| || || ||||||||||||||||||||||| |||| ||| |||||| |||||||| |||||||||| ||| ||||||||||    
T  3118150 agataaaaaagggtggtgacatgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtctacctatctt 3118051  T
Q  109 tttcc 113  Q
    |||||    
T  3118050 tttcc 3118046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 14023020 - 14023124
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||| ||||||||| ||| | || | ||||||||||||||||||||||||||  | ||||||   ||| || || ||||||||||| |||||||||    
T  14023020 agagatgacaaggggtgacgatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatct 14023119  T
Q  108 ttttc 112  Q
    |||||    
T  14023120 ttttc 14023124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 3987010 - 3986905
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||| |||| |||| || |||||||||| |||||||| ||| |||| || | |||| || | ||| |||||||| | ||| |||||||||    
T  3987010 agagatgaaaagggatgataatatgatgtaaaattactcaaatacccttaatacatggggtatacataataaatgtatgaaaaatgatgtctacctatct 3986911  T
Q  108 ttttcc 113  Q
    ||||||    
T  3986910 ttttcc 3986905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 24208530 - 24208635
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| |||||| ||| | || | ||||||||||||||||||||||||||  | |||| |  |||| || || ||||||| ||| |||||||||    
T  24208530 agagatgaaaaagggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtaaatgagaggtgtataaaaaaggatgtctacctatct 24208629  T
Q  108 ttttcc 113  Q
    ||||||    
T  24208630 ttttcc 24208635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 15345762 - 15345659
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatcttt 109  Q
    |||||||||  ||||||||||| |||| |||||||| |||| ||||||| |||| || |||||| ||||  || |||||||| | ||| ||||||| |||    
T  15345762 agatgaaaaaaggtgatgatatgatatcaaattactcaaatgcccctaatacatagggtgtacataagaagtgtatgaaaaaagatgtctacctattttt 15345663  T
Q  110 ttcc 113  Q
    ||||    
T  15345662 ttcc 15345659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 31800646 - 31800749
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatcttt 109  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||| || || |||||||||||| || |||||||||||||| | |||||||||    
T  31800646 agatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacatatggggtgtacacaagaggtgtatgaaaaagggtgtctgcctatcttt 31800745  T
Q  110 ttcc 113  Q
    ||||    
T  31800746 ttcc 31800749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 39371013 - 39371123
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||||||| ||||||||    
T  39371013 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctatc 39371112  T
Q  107 tttttccatgt 117  Q
    |||||||||||    
T  39371113 tttttccatgt 39371123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 1815721 - 1815656
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtaca 73  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||||    
T  1815721 agagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacacatagggtgtaca 1815656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 2237362 - 2237470
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| || |  || |||||| ||||  || |||||||||||||| ||||||||    
T  2237362 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtctacctatc 2237461  T
Q  107 tttttccat 115  Q
    |||||||||    
T  2237462 tttttccat 2237470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 14831630 - 14831736
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||| | |||||||||||| || |  || |||||| ||||  || |||||||||||||||||||||||    
T  14831630 agagatgaaaaagggtgatgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgtttacctatc 14831729  T
Q  107 tttttcc 113  Q
    |||||||    
T  14831730 tttttcc 14831736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 40888047 - 40887941
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| ||||| |||||| || |||||||||||||||||| |||| | ||  || |||||| ||||| || |||||||||||||| ||||||||    
T  40888047 agagatgaaaaagggtggtgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtctacctatc 40887948  T
Q  107 tttttcc 113  Q
    |||||||    
T  40887947 tttttcc 40887941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 13347216 - 13347320
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatctt 108  Q
    ||||||||| | |||||||||| || || ||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||||||| ||||||||||    
T  13347216 agatgaaaaagagtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtctacctatctt 13347315  T
Q  109 tttcc 113  Q
    |||||    
T  13347316 tttcc 13347320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 27553450 - 27553376
Alignment:
Q  36 taaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttt 110  Q
    ||||||||||||||||| |||||||||| || |||||| ||||| || |||||||||||||| || |||| ||||    
T  27553450 taaaattactaaaatactcctaacacatagggtgtacataagaggtgtatgaaaaagggtgtctatctatttttt 27553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 42683685 - 42683791
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| || || |||||| || ||||||||||||||||||||||| | ||  || |||||| ||||| || |||||||||| ||| || |||||    
T  42683685 agagatgaaaaaggatggtgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtctatctatc 42683784  T
Q  107 tttttcc 113  Q
    |||||||    
T  42683785 tttttcc 42683791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 9408144 - 9408094
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaa 58  Q
    ||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  9408144 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaa 9408094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 17225403 - 17225451
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccct 56  Q
    |||||||||||| ||||||||| | || | |||||||||||||||||||    
T  17225403 agagatgaaaagaggtgatgatgtgatgtgaaattactaaaatacccct 17225451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 18184639 - 18184744
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |||||| || || || |||||||||| ||| |||||||||    
T  18184639 agagatgaaaaggggtgatgatatgatataaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaaggatgtctacctatct 18184738  T
Q  108 ttttcc 113  Q
    ||||||    
T  18184739 ttttcc 18184744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 10203750 - 10203858
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||| |||||| ||||  || |||||| |||||||| |||||||||||||| ||||||||    
T  10203750 agagatgaaaaagggtggtgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtctacctatc 10203849  T
Q  107 tttttccat 115  Q
    |||||||||    
T  10203850 tttttccat 10203858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 30432425 - 30432530
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| ||| | || ||||||||| ||||| || |||||||||||||| || | ||||    
T  30432425 agagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccataatatatgggatgtacataagaggtgtatgaaaaagggtgtctatcaatct 30432524  T
Q  108 ttttcc 113  Q
    ||||||    
T  30432525 ttttcc 30432530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 36189302 - 36189406
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||||||| | ||| |||||| ||| | || |||||||||||||| |||||||||    
T  36189302 agagatgaaaaggagtgatgatatgatataaaattattaaaatacccctaacata-tgggtgtacataagtggtgtatgaaaaagggtgtctacctatct 36189400  T
Q  108 ttttcc 113  Q
    ||||||    
T  36189401 ttttcc 36189406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 44081866 - 44081964
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctat 105  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||||||| |||||||    
T  44081866 agagatgaaaaagggtgatgatataatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctat 44081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 12665438 - 12665537
Alignment:
Q  15 aaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||||  || | |||| ||||| || | |||||||| ||| |||||||||||||||    
T  12665438 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtctacctatctttttcc 12665537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 43186115 - 43186218
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatcttt 109  Q
    |||||||||  ||||||||||| ||||||||||||| |||| ||||||| |||| || |||||| ||||  || |||||||| | ||| |||||||||||    
T  43186115 agatgaaaaaaggtgatgatatgatataaaattactcaaatgcccctaatacatagggtgtacataagaagtgtatgaaaaatgatgtctacctatcttt 43186214  T
Q  110 ttcc 113  Q
    ||||    
T  43186215 ttcc 43186218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 42162684 - 42162790
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| ||||  || |||||| || |  || ||||||||| |||| ||||||||    
T  42162684 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtctacctatc 42162783  T
Q  107 tttttcc 113  Q
    |||||||    
T  42162784 tttttcc 42162790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 31318891 - 31318997
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||| ||||| ||||  || |||| | ||||  || |||||||| | ||| ||||||||    
T  31318891 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtctacctatc 31318990  T
Q  107 tttttcc 113  Q
    |||||||    
T  31318991 tttttcc 31318997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 44275792 - 44275897
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||| |||| |||||||||||| || |||||||||||||||||||||||||||| || |||||| ||||| || |||||||||||||| || ||||||    
T  44275792 agagattaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctatctatct 44275891  T
Q  108 ttttcc 113  Q
    ||||||    
T  44275892 ttttcc 44275897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 7217851 - 7217957
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacatt-ggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| |||||||||||| || ||||||||||||||||||  ||||||||  || |||||| ||||| || |||||||||||||||||||||||    
T  7217851 agagataaaaaagggtgatgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgtttacctatc 7217950  T
Q  107 tttttcc 113  Q
    |||||||    
T  7217951 tttttcc 7217957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 21391060 - 21390953
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| | ||||  |||| || ||||||||||||||||||||||||||||  | |||||| || || || |||||||||||||| |||||||||    
T  21391060 agagatgaaaatgagtgaatatatgatgtaaaattactaaaatacccctaacacatgaggtgtacataaaaggtgtatgaaaaagggtgtctacctatct 21390961  T
Q  108 ttttccat 115  Q
    ||||||||    
T  21390960 ttttccat 21390953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 35545005 - 35545102
Alignment:
Q  15 aaaaggggtgatgatataatataaaattactaaaa-tacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatcttttt 111  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||| |  |||||| ||| | || |||||||||||||| |||||||||||||    
T  35545005 aaaaggggtgatgatatgatgtaaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 6112716 - 6112821
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| || ||||||||| || |||||||||| |||||||||||| |||| |  |||||| ||||  || ||||||||| |||| |||||||||    
T  6112716 agagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccctaatacatggagtgtacataagaagtgtatgaaaaagagtgtctacctatct 6112815  T
Q  108 ttttcc 113  Q
    ||||||    
T  6112816 ttttcc 6112821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 28093202 - 28093095
Alignment:
Q  7 gagagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctat 105  Q
    |||||||||||| |||||||||||| || ||||| |||| |||||||||||| ||||  || |||||| ||||  || |||||||||| ||| |||||||    
T  28093202 gagagatgaaaaagggtgatgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtctacctat 28093103  T
Q  106 ctttttcc 113  Q
    ||||||||    
T  28093102 ctttttcc 28093095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 49243915 - 49244006
Alignment:
Q  22 gtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||||| || ||||||||||||||||||||||| |||| |  |||||| ||||| || |||||||||| ||| ||| |||||||||||    
T  49243915 gtgatgatatgatgtaaaattactaaaatacccctaatacatggagtgtacataagaggtgtatgaaaaaggatgtctacatatctttttcc 49244006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 3672360 - 3672466
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || || ||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||||| | ||||||||    
T  3672360 agagatgaaaaagggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatctacctatc 3672459  T
Q  107 tttttcc 113  Q
    |||||||    
T  3672460 tttttcc 3672466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 52191275 - 52191198
Alignment:
Q  38 aaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttccat 115  Q
    ||||||||||||||| ||||||| || || ||||||| |||| || || ||||||||||| |  | ||||||||||||    
T  52191275 aaattactaaaatactcctaacatatggggtgtacacgagaggtgtataaaaaagggtgtctttcaatctttttccat 52191198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 34108512 - 34108618
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattgga-tgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| |||| ||| |||||| ||||  || |||||||||||||||||||||||    
T  34108512 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgtttacctatc 34108611  T
Q  107 tttttcc 113  Q
    |||||||    
T  34108612 tttttcc 34108618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 36346669 - 36346562
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| || ||||||||| || ||||||||||||||||||||||||||||  || |||||| ||||| || |||||||||||||| ||||||||    
T  36346669 agagatgaaaaagg-tgatgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtctacctatc 36346571  T
Q  107 tttttccat 115  Q
    |||||||||    
T  36346570 tttttccat 36346562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 45782765 - 45782659
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattgga-tgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||||||||||||||||||||| ||| |||||| || |  || || ||||||||||| ||||||||    
T  45782765 agagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtctacctatc 45782666  T
Q  107 tttttcc 113  Q
    |||||||    
T  45782665 tttttcc 45782659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7699988 - 7699881
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| || ||||||||| |||||||||||||||||||||| ||||||||   | |||| | ||||| || |||||||||||||||||||||||    
T  7699988 agagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatc 7699889  T
Q  107 tttttcca 114  Q
    ||||||||    
T  7699888 tttttcca 7699881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7700186 - 7700079
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| || ||||||||| |||||||||||||||||||||| ||||||||   | |||| | ||||| || |||||||||||||||||||||||    
T  7700186 agagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatc 7700087  T
Q  107 tttttcca 114  Q
    ||||||||    
T  7700086 tttttcca 7700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7700384 - 7700277
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| || ||||||||| |||||||||||||||||||||| ||||||||   | |||| | ||||| || |||||||||||||||||||||||    
T  7700384 agagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatc 7700285  T
Q  107 tttttcca 114  Q
    ||||||||    
T  7700284 tttttcca 7700277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 7700582 - 7700475
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| || ||||||||| |||||||||||||||||||||| ||||||||   | |||| | ||||| || |||||||||||||||||||||||    
T  7700582 agagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgtttacctatc 7700483  T
Q  107 tttttcca 114  Q
    ||||||||    
T  7700482 tttttcca 7700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 26972309 - 26972202
Alignment:
Q  7 gagagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctat 105  Q
    |||||||||||| |||||||||||| || |||||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||||||| |||||||    
T  26972309 gagagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtctacctat 26972210  T
Q  106 ctttttcc 113  Q
    ||||||||    
T  26972209 ctttttcc 26972202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 34828151 - 34828256
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||| | ||||||||| || ||||||||||||||||||||||||| || || ||| || ||| | || |||||||||| ||| |||||||||    
T  34828151 agagatgaaaagtgatgatgatatgatgtaaaattactaaaatacccctaacatatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatct 34828250  T
Q  108 ttttcc 113  Q
    ||||||    
T  34828251 ttttcc 34828256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 28307600 - 28307494
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||| ||||| ||  || |||||| ||||| || |||||||| | ||| ||||||||    
T  28307600 agagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtctacctatc 28307501  T
Q  107 tttttcc 113  Q
    |||||||    
T  28307500 tttttcc 28307494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 46475110 - 46475216
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccc-taacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||||||||||||||| ||| | || | |||||||||||||||||| ||||||||  ||||||||  |||| || || ||||||||||| ||||||||    
T  46475110 agagatgaaaaggggtgacgatgtgatgtgaaattactaaaataccccataacacatgagatgtacatgagaggtgtataaaaaagggtgtctacctatc 46475209  T
Q  107 tttttcc 113  Q
    |||||||    
T  46475210 tttttcc 46475216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 5811268 - 5811163
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||||||| ||| | || | ||||||||||||||||||||||||||  | ||||||   ||| || || ||||||||||| |||||||||    
T  5811268 agagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgggaggtgtataaaaaagggtgtctacctatct 5811169  T
Q  108 ttttcc 113  Q
    ||||||    
T  5811168 ttttcc 5811163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 31148376 - 31148481
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| |||||||||||| || ||||||||||||||||  ||||||| || || |||  | ||||| || ||||||||| |||| |||||||||    
T  31148376 agagatgaaaatgggtgatgatatgatgtaaaattactaaaataagcctaacatatggggtgtgtataagaggtgtatgaaaaagagtgtctacctatct 31148475  T
Q  108 ttttcc 113  Q
    ||||||    
T  31148476 ttttcc 31148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 30887786 - 30887890
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgt-ttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| ||||||| |||| |||| || |||| | ||||  || |||||||||||||| |||| ||||    
T  30887786 agagatgaaaaagggtgatgatatgatgtaaaattacttaaatacctctaatacatggggtgtatataagaagtgtatgaaaaagggtgtcttacgtatc 30887885  T
Q  107 ttttt 111  Q
    |||||    
T  30887886 ttttt 30887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 42221061 - 42220963
Alignment:
Q  15 aaaaggggtgatgatataatataaaattact-aaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    ||||||||||||||||| || | |||||||| |||||||||||||||||| |  |||||| ||| | || |||||||| ||||| |||||||||||||||    
T  42221061 aaaaggggtgatgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaa-ggtgtctacctatctttttcc 42220963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 13108241 - 13108338
Alignment:
Q  16 aaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||||| ||| | || | ||||||||||||||||||||||||||  | ||||||  | || || || ||||||||||| |||||||||||||||    
T  13108241 aaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatgaggtgtacatgaaaggtgtataaaaaagggtgtctacctatctttttcc 13108338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 29953665 - 29953571
Alignment:
Q  20 gggtgatgatataatataaaattactaaaatacccctaacacattgga-tgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||||||| || |||||||||| ||||| |||||| |||| | | | |||| ||||  || |||||||||||||| |||||||||||||||    
T  29953665 gggtgatgatatgatgtaaaattactcaaatatccctaatacatggaagtctacataagaagtgtatgaaaaagggtgtctacctatctttttcc 29953571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 23980217 - 23980322
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||||||| ||| | || | |||||||||||||||| |||||| ||  ||||||||    | ||| || ||||||| ||| |||||||||    
T  23980217 agagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacctctaacatatgagatgtacatggaaaatgtataaaaaaggatgtctacctatct 23980316  T
Q  108 ttttcc 113  Q
    ||||||    
T  23980317 ttttcc 23980322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 36957515 - 36957570
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat 63  Q
    ||||||||||| || |||| || |||| |||||||||||||||||||| |||||||    
T  36957515 agagatgaaaatggatgataatgtaatgtaaaattactaaaatacccccaacacat 36957570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 21807427 - 21807374
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacac 61  Q
    ||||||||||| || ||||||| | || | ||||||||||||||||||||||||    
T  21807427 agagatgaaaatggatgatgatgttatgtgaaattactaaaatacccctaacac 21807374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 34307239 - 34307137
Alignment:
Q  12 atgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattgga-tgtacacaagagatgcatgaaaaagggtgtttacctatctttt 110  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||||| ||| |||||| ||||| || |||||||| ||||| ||||||||||||    
T  34307239 atgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtctacctatctttt 34307140  T
Q  111 tcc 113  Q
    |||    
T  34307139 tcc 34307137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 39249968 - 39249864
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| || || ||||||||| ||||||||||||||||||||||| ||||  || |||||| ||||| || |||||||| ||||| ||||||||    
T  39249968 agagatgaaaaaggatggtgatataatgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtctacctatc 39249869  T
Q  107 ttttt 111  Q
    |||||    
T  39249868 ttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 28647441 - 28647544
Alignment:
Q  10 agatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatcttt 109  Q
    ||||||||||||||| |||| | || | |||||| |||||||  |||||||||| |||||||||  ||||||| || ||||||||||| |||||||||||    
T  28647441 agatgaaaaggggtggtgatgtgatgtgaaattattaaaatattcctaacacatgggatgtacatgagagatgtataaaaaagggtgtctacctatcttt 28647540  T
Q  110 ttcc 113  Q
    ||||    
T  28647541 ttcc 28647544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 19258777 - 19258674
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||||||||| |||| | || | |||||| |||||||  |||||||||| || ||||||  ||||||| || ||||||||||| |||||||||    
T  19258777 agagatgaaaaggggtggtgatgtgatgtgaaattattaaaatattcctaacacatggggtgtacatgagagatgtataaaaaagggtgtctacctatct 19258678  T
Q  108 tttt 111  Q
    ||||    
T  19258677 tttt 19258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 2509110 - 2509216
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| ||||| |||||| || |||||||||||||||| |||||| ||||  || |||||| ||||| || ||||||||  |||| ||||||||    
T  2509110 agagatgaaaaagggtggtgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtctacctatc 2509209  T
Q  107 tttttcc 113  Q
    |||||||    
T  2509210 tttttcc 2509216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 46901840 - 46901734
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattg-gatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||| ||| | |||| | | |||||| |||| ||| |||||||||| ||| ||||||||    
T  46901840 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtctacctatc 46901741  T
Q  107 tttttcc 113  Q
    |||||||    
T  46901740 tttttcc 46901734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 51339888 - 51339783
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| |||||||||||| || |||||||||||||||||| |||||||||    |||||| ||||| || |||||||||||||| |||||||||    
T  51339888 agagatgaaaaagggtgatgatatgatgtaaaattactaaaatacctctaacacatgatgtgtacataagaggtgtatgaaaaagggtgtctacctatct 51339789  T
Q  108 ttttcc 113  Q
    ||||||    
T  51339788 ttttcc 51339783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 46112049 - 46111941
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||||||| ||||  ||||||| | || || || |||||||| ||||| ||||||||    
T  46112049 agagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtctacctatc 46111950  T
Q  107 tttttccat 115  Q
    |||||||||    
T  46111949 tttttccat 46111941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 29472901 - 29473000
Alignment:
Q  14 gaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||||| || ||| || ||| | || |||||||||| ||| |||||||||||||||    
T  29472901 gaaaagggatgatgatatgatgtaaaattactaaaatacccctaacacatggggtgtgcataagtggtgtatgaaaaaggatgtctacctatctttttcc 29473000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 21559647 - 21559753
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||  || |||||| ||||| || |||||||| ||||| || |||||    
T  21559647 agagatgaaaaagggtaatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtctatctatc 21559746  T
Q  107 tttttcc 113  Q
    |||||||    
T  21559747 tttttcc 21559753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 30735594 - 30735495
Alignment:
Q  15 aaaaggggtgatgatataatataaaattactaaaa-tacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||| |||||||||||| || | |||||||||||| |||||||||||||| |  |||||| ||| | || |||||||||||||| |||||||||||||||    
T  30735594 aaaaagggtgatgatatgatgttaaattactaaaaatacccctaacacatggagtgtacataagtggtgtatgaaaaagggtgtctacctatctttttcc 30735495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 39467206 - 39467101
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||||||||| ||| | |||| |||||||||||||| || ||||||||  | ||||||   ||| || || ||||||||||| |||||||||    
T  39467206 agagatgaaaaggggtgaggatgtgatatgaaattactaaaatatccataacacatgaggtgtacatgggaggtgtataaaaaagggtgtgtacctatct 39467107  T
Q  108 ttttcc 113  Q
    ||||||    
T  39467106 ttttcc 39467101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 34750003 - 34749897
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| ||||  || |||||| ||||  || |||||||||| ||| |  |||||    
T  34750003 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctggctatc 34749904  T
Q  107 tttttcc 113  Q
    |||||||    
T  34749903 tttttcc 34749897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 36749492 - 36749596
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| ||||||| |||| ||||  || |||||| || |  || ||||||||| |||| ||||||||    
T  36749492 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtctacctatc 36749591  T
Q  107 ttttt 111  Q
    |||||    
T  36749592 ttttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 36370443 - 36370388
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat 63  Q
    ||||||||||| |||||||||||| || |||||||||| |||||||||||| ||||    
T  36370443 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacat 36370388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 44000075 - 44000181
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| ||||||| |||| ||||  ||  ||||| || |  || ||||||||| |||| ||||||||    
T  44000075 agagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtctacctatc 44000174  T
Q  107 tttttcc 113  Q
    |||||||    
T  44000175 tttttcc 44000181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 48200771 - 48200877
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| || ||||||||| || |||||||||| |||||||| ||| ||||  || |||||| || |  || |||||||||| ||| ||||||||    
T  48200771 agagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtctacctatc 48200870  T
Q  107 tttttcc 113  Q
    |||||||    
T  48200871 tttttcc 48200877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 39072350 - 39072276
Alignment:
Q  41 ttactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttccat 115  Q
    |||||||||||||| | |||||| || ||||||  | ||||| || |||||| |||| |||||||||||||||||    
T  39072350 ttactaaaatacccttgacacatggggtgtacatcaaagatgtataaaaaagtgtgtctacctatctttttccat 39072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 22894766 - 22894870
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| || ||||||||| || || ||||||| |||||||||||| ||||  || |||||| ||||  || ||| |||||||||| || |||||    
T  22894766 agagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatg-aaaagggtgtctatctatc 22894864  T
Q  107 tttttc 112  Q
    ||||||    
T  22894865 tttttc 22894870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 33732655 - 33732760
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||||||| | || || |||||| ||||| || |||||||||||||| |||||||||    
T  33732655 agagatgaaaaagggtggtgatatgatgtaaaattactaaaatacccctaatatatggggtgtacataagaggtgtatgaaaaagggtgtctacctatct 33732754  T
Q  108 ttttcc 113  Q
    ||||||    
T  33732755 ttttcc 33732760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 3831002 - 3830900
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    |||||||||||| |||||| || | || |||||||||||| ||||||||||||||| || |||||| ||||| || |||||||||||||| |||||||||    
T  3831002 agagatgaaaagtggtgattatctgatgtaaaattactaatatacccctaacacatggggtgtacataagaggtgtatgaaaaagggtgtctacctatct 3830903  T
Q  108 ttt 110  Q
    |||    
T  3830902 ttt 3830900  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 37498956 - 37498862
Alignment:
Q  20 gggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||||||| || ||||||||||||||||||||||||||||  ||||||||| ||||| || || ||||||||||| |||||||||||||||    
T  37498956 gggtgatgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtctacctatctttttcc 37498862  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 16089920 - 16090012
Alignment:
Q  21 ggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||| |||||| || |||||||||||||||||||||||||||| || |||||| ||||| || |||||||| ||||| |||||||||||||||    
T  16089920 ggtggtgatatgatgtaaaattactaaaatacccctaacacatggggtgtacataagaggtgtatgaaaaaaggtgtctacctatctttttcc 16090012  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 44958199 - 44958305
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    |||||| |||| |||||||||||| || ||||||||||||||||||||||||||||  || | |||| ||||| || |||||||||| ||| ||||||||    
T  44958199 agagataaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtctacctatc 44958298  T
Q  107 tttttcc 113  Q
    |||||||    
T  44958299 tttttcc 44958305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 14573081 - 14573136
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat 63  Q
    ||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||    
T  14573081 agagatggaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacat 14573136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 6376343 - 6376238
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatct 107  Q
    ||||||||||| |||||| ||| | || | |||||||||||||||| |||||||||  ||||||||   ||| || || ||||||| ||| |||||||||    
T  6376343 agagatgaaaatgggtgaggatgtgatgtgaaattactaaaatacctctaacacatgagatgtacatgggaggtgtataaaaaaggatgtctacctatct 6376244  T
Q  108 ttttcc 113  Q
    ||||||    
T  6376243 ttttcc 6376238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 41188859 - 41188963
Alignment:
Q  12 atgaaaaggggtgatgatataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatga-aaaagggtgtttacctatctttt 110  Q
    |||||||||| ||||||| | || |||||||||||||||| | || ||||||  ||||||||  |||| || || | |||||||||| | ||||||||||    
T  41188859 atgaaaagggatgatgatgtgatgtaaaattactaaaatatctctgacacatgtgatgtacatgagaggtgtataacaaaagggtgtctgcctatctttt 41188958  T
Q  111 tccat 115  Q
    |||||    
T  41188959 tccat 41188963  T

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Target: scaffold0043 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 87247 - 87162
Alignment:
Q  28 atataatataaaattactaaaatacccctaacacattggatgtacacaagagatgcatgaaaaagggtgtttacctatctttttcc 113  Q
    |||||||||||||||||||||||||||||||||||| || |||||| || || || |||||||| ||||| |||||||||||||||    
T  87247 atataatataaaattactaaaatacccctaacacatggggtgtacataaaaggtgtatgaaaaaaggtgtctacctatctttttcc 87162  T

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Target: scaffold0062 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 6804 - 6917
Alignment:
Q  8 agagatgaaaaggggtgatgatataatataaaattactaaaatacccctaacacat-tggatgtacacaagagatgcatgaaaaagggtgtttacctatc 106  Q
    ||||||||||| |||||||||||| || |||||||||| ||||| |||||| ||||  || |||||| ||||  || |||||||| ||| | ||||||||    
T  6804 agagatgaaaaagggtgatgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatctacctatc 6903  T
Q  107 tttttccatgttaa 120  Q
    ||||||||| ||||    
T  6904 tttttccatattaa 6917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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