View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6006_low_20 (Length: 295)
Name: NF6006_low_20
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 9846074 - 9845802
Alignment:
| Q |
7 |
aagaatataaaaaccaacagtctagatgagtatgctttccaatattttggatgaaacattaagctatatgttacatgaattcaaatgtaaaattactgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9846074 |
aagaatataaaaaccaacagtctagatgagtatgctttccaatattttggatgaaacattaagctatatgttacatgaattcaaatgtaaaattactgat |
9845975 |
T |
|
| Q |
107 |
ttcaacaagatggggcaaatatggatcttctttgtttttgggaattctgacacataatcaaacaacaaattatgtggcaatttaagatgaaaaaagaaac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845974 |
ttcaacaagatggggcaaatatggatcttctttgtttttgggaattctgacacataatcaaacaacaaattatgtggcaatttaagatgaaaaaagaaac |
9845875 |
T |
|
| Q |
207 |
aaggggggaataaaccagatttttggatgctctaacttaaccaacactttgtagttagcaccggtctaccaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9845874 |
aaggggggaataaaccagatttttggatgctctaacttaaccaacactttgtagttagcaccggtctaccaaa |
9845802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 9835196 - 9834924
Alignment:
| Q |
7 |
aagaatataaaaaccaacagtctagatgagtatgctttccaatattttggatgaaacattaagctatatgttacatgaattcaaatgtaaaattactgat |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9835196 |
aagaatatcaaaaccaacagtctagatgagtatgctttccaatattttggatgaaacattaagctatatgttacatgaattcaaatgtaaaattactgat |
9835097 |
T |
|
| Q |
107 |
ttcaacaagatggggcaaatatggatcttctttgtttttgggaattctgacacataatcaaacaacaaattatgtggcaatttaagatgaaaaaagaaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9835096 |
ttcaacaagatggggcaaatatggatcttctttgtttttgggaattctgacacataatcaaacaacaaattatgtggcaatttaagatgtaaaaagaaac |
9834997 |
T |
|
| Q |
207 |
aaggggggaataaaccagatttttggatgctctaacttaaccaacactttgtagttagcaccggtctaccaaa |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9834996 |
aaggggggaataaaccagatttttggatgctctaacttaaccaacactttgtagttagcaccggtctaccaaa |
9834924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University