View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_21 (Length: 294)
Name: NF6006_low_21
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_21 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 4776060 - 4775782
Alignment:
| Q |
20 |
catctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacaggaaa----caggtgcttatttaattt |
115 |
Q |
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| T |
4776060 |
catctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggagacacaattgacaggaaatcaacaggtgcttatttaattt |
4775961 |
T |
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| Q |
116 |
atattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactca |
215 |
Q |
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| T |
4775960 |
attttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactca |
4775861 |
T |
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| Q |
216 |
agaattaatatgggttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacatt |
294 |
Q |
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| T |
4775860 |
agaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacatt |
4775782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 41 - 294
Target Start/End: Complemental strand, 43061400 - 43061143
Alignment:
| Q |
41 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
136 |
Q |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
137 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaaa |
236 |
Q |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaaa |
43061201 |
T |
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| Q |
237 |
cttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacatt |
294 |
Q |
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| T |
43061200 |
cttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacatt |
43061143 |
T |
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