View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_22 (Length: 283)
Name: NF6006_low_22
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 21290049 - 21289939
Alignment:
| Q |
157 |
aataattaaacgataaattcaaagaatttcgatattgttactaacccgaatatctctagaaagaggatgagaacaaagaacaccagtacaagtccgatcg |
256 |
Q |
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| T |
21290049 |
aataattaaacgacaaattcaaagaatttcgatattgttactaacccgaatatctctagaaagaggatgagaacaaagaacaccagtacaagtccgatcg |
21289950 |
T |
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| Q |
257 |
gaaatcttcat |
267 |
Q |
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| T |
21289949 |
gaaatcttcat |
21289939 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 21290124 - 21290088
Alignment:
| Q |
125 |
accattaacttcagatttaaacaacatgctcaaataa |
161 |
Q |
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| T |
21290124 |
accattaacttcagatttaaacaacatgctcaaataa |
21290088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 40776542 - 40776604
Alignment:
| Q |
193 |
gttactaacccgaatatctctagaaagaggatgagaacaaagaacaccagtacaagtccgatc |
255 |
Q |
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| T |
40776542 |
gttaccaacccgaatatcccgagaaagaggatgagaacatagaacaccagtgcatgtccgatc |
40776604 |
T |
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