View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_24 (Length: 254)
Name: NF6006_low_24
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46873144 - 46872906
Alignment:
| Q |
1 |
acttatctccatagggacatttctccccattgcaatacttcttgcacagtttcatcttgtttatgannnnnnnatcttcgttgcacgaaccaactagctt |
100 |
Q |
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| T |
46873144 |
acttatctccatagggacatttctccccattgcaatacttcttgcacagtttcatcttgtttatgatttttttatcttcgttgcacggaccaactagctt |
46873045 |
T |
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| Q |
101 |
ctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatc |
200 |
Q |
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| T |
46873044 |
ctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatatgaacttagtacaaatc |
46872945 |
T |
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| Q |
201 |
tgtgttttgtagaaaatgtggtctgatctgtttgattga |
239 |
Q |
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| T |
46872944 |
cgtgttttgtagaaaatgtggtctgatctgtttgattga |
46872906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 46890348 - 46890198
Alignment:
| Q |
89 |
accaactagcttctgcgaatttggaggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaac |
188 |
Q |
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| T |
46890348 |
accaactaacttctgccaatgtggtggtggttgccttaactcttcagctccatgagcaaagttgcaattttgtccgtttctacaagtaccaaatctgaac |
46890249 |
T |
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| Q |
189 |
ttagtacaaatctgtgttttgtagaaaatgtggtctgatctgtttgattga |
239 |
Q |
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| T |
46890248 |
ttagtacaaattcgtgttttgtagaaaatgtggtctgatttgtttgattga |
46890198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 46863763 - 46863656
Alignment:
| Q |
129 |
tcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagtacaaatctgtgttttgtagaaaatgtggtctgatc |
228 |
Q |
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|||||| ||||||||||||||||||||| | | ||||||||||||| |||||| |||||||||||||| || | || ||||||||||||||| || || |
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| T |
46863763 |
tcttcaaccccatgagcaaagttgcaatctttaccgtttctacaagtaccaaacctgaacttagtacagattcgagtcttgtagaaaatgtgggttgctc |
46863664 |
T |
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| Q |
229 |
tgtttgat |
236 |
Q |
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|||||||| |
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| T |
46863663 |
tgtttgat |
46863656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46890464 - 46890412
Alignment:
| Q |
3 |
ttatctccatagggacatttctccccattgcaatacttcttgcacagtttcat |
55 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
46890464 |
ttatctccatatggacattcctccccattgcaataattcttgcacagtttcat |
46890412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 46898876 - 46898797
Alignment:
| Q |
114 |
ggtggttgccttatctcttcagccccatgagcaaagttgcaatttgttccgtttctacaagcaccaaatctgaacttagt |
193 |
Q |
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||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |
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| T |
46898876 |
ggtggctgccttatctcatcagccccgtgagcgtagttgcaattttcaccgtttctacaagtaccaaacctgaacttagt |
46898797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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