View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_29 (Length: 239)
Name: NF6006_low_29
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_29 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (2 HSPs) |
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Alignment Details
Target: scaffold0185 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 3323 - 3544
Alignment:
| Q |
18 |
tattgaaagcaacctttttctaaaaaattattcggactttctaaaagcaaaacataagagagaagcaaaaacaactaataaagacatgaaaaccatgata |
117 |
Q |
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| T |
3323 |
tattgaaagcaacctttttctaaaaaattattgggactttctaaaagcaaaacataagagagaagcaaaaaccactaataaagacatgaaaaccatgata |
3422 |
T |
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| Q |
118 |
tttataagacaaatatgttaaattaatctttattataaggtacaacattaatctatccccaaaaagaggatgcctccagtatcttaaccagaaagaatac |
217 |
Q |
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| T |
3423 |
tttataagacaaatatgttaaattaatctttattataaggtacaacattaatctatccccaaaaagaggatgccgccagtatcttaaccagaaagaatac |
3522 |
T |
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| Q |
218 |
tgaaaataatctccttaattat |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
3523 |
tgaaaataatctccttaattat |
3544 |
T |
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Target: scaffold0048 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 50505 - 50593
Alignment:
| Q |
18 |
tattgaaagcaacctttttctaaaaaattattcggactttctaaaagcaaaacataagagagaagcaaaaacaactaataaagacatga |
106 |
Q |
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| T |
50505 |
tattgaaagcaacctttttctaaaaaattatctgtactttttaaaagcaaaacataagagaaaagcaaaaacaattaataaaaacatga |
50593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 61788 - 61879
Alignment:
| Q |
18 |
tattgaaagcaacctt---tttctaaaaaattattcggactttctaaaagcaaaacataagagagaagcaaaaacaactaataaagacatga |
106 |
Q |
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||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||||||| |||||||||||| ||||||| |||||| |
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| T |
61788 |
tattgaaagcaacctgctctttctaaaaaattatctgtactttttaaaagcaaaacataagagaaaagcaaaaacaattaataaaaacatga |
61879 |
T |
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