View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_30 (Length: 229)
Name: NF6006_low_30
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 9281480 - 9281673
Alignment:
| Q |
17 |
caaaggttgcagttaggcagggaattagccattgatcctaccaagatcaaattttggtttcagaatagaaggactcagttgaaggtatttatgagtgttt |
116 |
Q |
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| T |
9281480 |
caaaggttgcagttaggcagggaattagccatggatcctaccaagatcaaattttggtttcagaatagaaggactcagttgaaggtatttatgagtgttt |
9281579 |
T |
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| Q |
117 |
tttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattctttgtggttttggtt |
210 |
Q |
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| T |
9281580 |
tttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattctttgtggttttggtt |
9281673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 9292451 - 9292644
Alignment:
| Q |
17 |
caaaggttgcagttaggcagggaattagccattgatcctaccaagatcaaattttggtttcagaatagaaggactcagttgaaggtatttatgagtgttt |
116 |
Q |
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| T |
9292451 |
caaaggttgcagttaggcagggaattagccatggatcctaccaagatcaaattttggtttcagaatagaaggactcagttgaaggtatttatgagtgttt |
9292550 |
T |
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| Q |
117 |
tttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattctttgtggttttggtt |
210 |
Q |
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| T |
9292551 |
tttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattctttgtggttttggtt |
9292644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 9266278 - 9266387
Alignment:
| Q |
96 |
tgaaggtatttatgagtgttttttaaattatattagggctttgtgtgtgttttatacatgcatgggattatcatatttatgtgttattttacaatgattc |
195 |
Q |
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| T |
9266278 |
tgaaggtatttgtgtgtgtttttaaaattatattagggttgtgtgtgtgttttaga----catgggattat-atatttatgtgtgatttcacaatgattc |
9266372 |
T |
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| Q |
196 |
tttgtggttttggtt |
210 |
Q |
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| T |
9266373 |
tttctggttttggtt |
9266387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 9232566 - 9232528
Alignment:
| Q |
172 |
ttatgtgttattttacaatgattctttgtggttttggtt |
210 |
Q |
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| T |
9232566 |
ttatgtgttattttacaacgattctttgtggttttggtt |
9232528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 9232921 - 9232881
Alignment:
| Q |
69 |
tttggtttcagaatagaaggactcagttgaaggtatttatg |
109 |
Q |
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| T |
9232921 |
tttggtttcagaataaaagggctcagatgaaggtatttatg |
9232881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 28597638 - 28597729
Alignment:
| Q |
11 |
gagaagcaaaggttgcagttaggcagggaattagccattgatcctaccaagatcaaattttggtttcagaatagaaggactcagttgaaggt |
102 |
Q |
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||||| ||||||||||||||| |||| |||||||| | | ||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
28597638 |
gagaaacaaaggttgcagttaagcagagaattagctttggctcctagacagatcaaattttggtttcagaacagaaggactcagatgaaggt |
28597729 |
T |
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