View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_31 (Length: 224)
Name: NF6006_low_31
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_31 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 143047 - 143253
Alignment:
| Q |
1 |
gatcggaatatgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaa |
100 |
Q |
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| T |
143047 |
gatcggaatatgtactaagaacagctacaaagttgagtgaagctggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaa |
143146 |
T |
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| Q |
101 |
gacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaagttacaaatcccgcatttgaatgtagaccaagca |
200 |
Q |
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| T |
143147 |
gacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaagttacaaatcccgcatttgaatgtagaccaagca |
143246 |
T |
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| Q |
201 |
acagaat |
207 |
Q |
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||||||| |
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| T |
143247 |
acagaat |
143253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 298441 - 298637
Alignment:
| Q |
11 |
tgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacaccaatt |
110 |
Q |
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| T |
298441 |
tgtactaagaacagctacaaagttgagggaagcaggtattagctttgagaaagttcaaggtagaagctattgtgacttaaagtttaagaagacatcaatt |
298540 |
T |
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| Q |
111 |
ttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaagttacaaatcccgcatttgaatgtagaccaagcaacagaat |
207 |
Q |
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| T |
298541 |
ttgagatgggttttgtgctgaggttgtgtaccatgttttcaatttgtcgaatctaagttacatatcccgcatttgaaagtagaccaagcaactgaat |
298637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 67 - 203
Target Start/End: Complemental strand, 45958549 - 45958413
Alignment:
| Q |
67 |
aaggtagaagctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccatgttttaaatttgtggaatctaa |
166 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
45958549 |
aaggtagatgctattgtgacttaaagtttaagaagacaccaattttgagctggtttttgtgcttaggttgtgtaccaggttttaaatttgttgaatctac |
45958450 |
T |
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| Q |
167 |
gttacaaatcccgcatttgaatgtagaccaagcaaca |
203 |
Q |
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| T |
45958449 |
gttacaaatcccgcatttgaaagtagaccaagcaaca |
45958413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45960632 - 45960562
Alignment:
| Q |
1 |
gatcggaatatgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaacttcaaggt |
71 |
Q |
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| T |
45960632 |
gatcagaatatgcactaagaacagctacaaagttgagtgaagcagatattagatttgagaaagttcaaggt |
45960562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 25539350 - 25539486
Alignment:
| Q |
8 |
atatgtactaagaacagctacaaagttgagtgaagcaggtattagtttcgagaaacttcaaggtagaagctattgtgacttaaagtttaagaagacacca |
107 |
Q |
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||||||||||| ||| || |||||||||| |||||| | |||||| || |||||| | |||||| |||||||| || |||||||||| || || ||| |
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| T |
25539350 |
atatgtactaaaaactgcaacaaagttgaatgaagcggatattagctttgagaaagtataaggtaaaagctatttggaaataaagtttaacaaaacccca |
25539449 |
T |
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| Q |
108 |
attttgagctggtttttgtgcttaggttgtgtaccat |
144 |
Q |
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| T |
25539450 |
attctcaactggtttttgtgcctaggttgtttaccat |
25539486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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