View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6006_low_4 (Length: 535)
Name: NF6006_low_4
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 305 - 527
Target Start/End: Complemental strand, 16064406 - 16064184
Alignment:
| Q |
305 |
gggaatcagacattaaattcctatcataaatgtataacagaatatacagaacatgctttacatcataagggttactcccaattagtgacgacttatcatc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064406 |
gggaatcagacattaaattcctatcataaatgtataacagaatatacagaacatgctttacatcataagggttactcccaattagtgacgacttatcatc |
16064307 |
T |
|
| Q |
405 |
aacacaacaatcattcggcaatattacaagaaatttgttgtaacgcaagaagtgttaaattcaaataagcttgttatctatttgtttcttctcatactcc |
504 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064306 |
aacacaacaatcattcggcaacattacaagaaatttgttgtaacgcaagaagtgttaaattcaaataagcttgttatctatttgtttcttctcatactct |
16064207 |
T |
|
| Q |
505 |
ctctcatctatttgtttcttctc |
527 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
16064206 |
ctctcatctatttgtttcttctc |
16064184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 16064679 - 16064459
Alignment:
| Q |
20 |
taaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatatttttccataaaaaatgaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16064679 |
taaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcgaggtaatgacacctctctcttttcatatatttttccataaaaa-tgaa |
16064581 |
T |
|
| Q |
120 |
gtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16064580 |
gtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
16064481 |
T |
|
| Q |
220 |
gagaataatgagttacatatgc |
241 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16064480 |
gagaataatgagttacatatgc |
16064459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 29370079 - 29370297
Alignment:
| Q |
20 |
taaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatatttttccataaaaaatgaa |
119 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| | |||||||| |||| |||||||||||||| ||||||||| |
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| T |
29370079 |
taaatgaggtaaaagagagaaatacatatttgtttagacgaaaagctaatcgaggtaaaggaacctctctatttttatatatttttccat-aaaaatgaa |
29370177 |
T |
|
| Q |
120 |
gtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
| |
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||||| ||| |||||||||||| ||||||||||| |||||||| |||||| ||||| |||||| ||||||||||| |||| ||| |||| ||||||||| |
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| T |
29370178 |
gtgatatttatgtttataattgcttcgtatctgcatacgtgttcaagaat-cgtagttgccaagatgagtaaatgcttacgtatgtaaagtcatattctt |
29370276 |
T |
|
| Q |
220 |
gagaataatgagttacatatg |
240 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29370277 |
gagaataatgagttacatatg |
29370297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 21982843 - 21982625
Alignment:
| Q |
20 |
taaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatatttttccataaaaaatgaa |
119 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||| |||||| | |||||||| |||| ||||||||||||||| |||||||| |
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| T |
21982843 |
taaatgaggtaaaagagagaaatacatatttgtttagacgaaaagctaatcgaggtaaaggaacctctctatttttatatatttttccata-aaaatgaa |
21982745 |
T |
|
| Q |
120 |
gtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
| |
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||||| ||| |||||||||||| ||||||||||| |||||||| |||||| ||||| |||||| ||||||||||| |||| ||| |||| ||||||||| |
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| T |
21982744 |
gtgatatttatgtttataattgcttcgtatctgcatacgtgttcaagaat-cgtagttgccaagatgagtaaatgcttacgtatgtaaagtcatattctt |
21982646 |
T |
|
| Q |
220 |
gagaataatgagttacatatg |
240 |
Q |
| |
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||||||||||||||||||||| |
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| T |
21982645 |
gagaataatgagttacatatg |
21982625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 36562547 - 36562358
Alignment:
| Q |
31 |
aaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttc-atatatttttccataaaaaatgaagtgatgtttt |
129 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36562547 |
aaagagataaagacatatttgtttggacgaaaagccaattgaggtaagggcacctctctattttttatatatttttccataaaaaatgaagtgatgttta |
36562448 |
T |
|
| Q |
130 |
tgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||| | || || ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
36562447 |
tgtttataattgttttgtatctgcttacgtgtttaaaaatatgcagttgtcaagatgagtaaatgtttacatatgcaaattcatattctt |
36562358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 36545767 - 36545956
Alignment:
| Q |
31 |
aaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttc-atatatttttccataaaaaatgaagtgatgtttt |
129 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| ||| |||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
36545767 |
aaagagataaagacatatttgtttggacgaaaagccaattgaggtaagggcacctctctattttttatatatttttccataaaaaatgaagtgatgttta |
36545866 |
T |
|
| Q |
130 |
tgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
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|||||||||||| || |||||||||||||||||||| |||| | || || ||| |||||||||||||||||||| |||| ||||||||| |
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| T |
36545867 |
tgtttataattgctttgtatctgcttacgtgtttaaaaatatgcagttgtcaagatgagtaaatgtttacatatgcaaattcatattctt |
36545956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 4023412 - 4023630
Alignment:
| Q |
20 |
taaatgagataaaagagagaaagacgtatttgtttagacgaaaagctaatcaaggtaatgacacctctctcttttcatatatttttccataaaaaatgaa |
119 |
Q |
| |
|
|||||||| | ||||||| |||||| ||||||||| |||||||||||| || |||| | ||||||||| |||| |||||||||||||||||| ||||| |
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| T |
4023412 |
taaatgaggtgaaagagaaaaagacatatttgtttggacgaaaagctagtcgaggtgagagcacctctctatttttatatatttttccataaaa-atgaa |
4023510 |
T |
|
| Q |
120 |
gtgatgtttttgtttataattgtttcgtatctgcttacgtgtttaagaatacgtagctgccaaaatgagtaaatgtttacatatacaaagccatattctt |
219 |
Q |
| |
|
||||||||| |||||||||||| ||| || | |||| |||||||||||||||| | || ||| |||||||| |||||||||| ||||| || |||||| |
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| T |
4023511 |
gtgatgtttatgtttataattgattcacatatacttatgtgtttaagaatacgtggttgtcaagatgagtaattgtttacataagcaaagtcacattctt |
4023610 |
T |
|
| Q |
220 |
gagaataatgagttacatat |
239 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
4023611 |
gagaataatgagttacatat |
4023630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 330 - 437
Target Start/End: Original strand, 4024992 - 4025099
Alignment:
| Q |
330 |
ataaatgtataacagaatatacagaacatgctttacatcataagggttactcccaattagtgacgacttatcatcaacacaacaatcattcggcaatatt |
429 |
Q |
| |
|
||||||||||| | ||||||| | |||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||| |
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|
| T |
4024992 |
ataaatgtatagctgaatatagataacatgctttacatcataagggttactccctattagtgacaacttgtcatcaatgtgacaatcactcggcaatatt |
4025091 |
T |
|
| Q |
430 |
acaagaaa |
437 |
Q |
| |
|
||||||| |
|
|
| T |
4025092 |
gcaagaaa |
4025099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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