View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_5 (Length: 488)
Name: NF6006_low_5
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 316 - 478
Target Start/End: Original strand, 9551316 - 9551478
Alignment:
| Q |
316 |
acaaacactatggctataccaacttcttggtccaaatatactttgttcatgaacacctctttccttttggtgagttctattttcatgattgttgaattta |
415 |
Q |
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| T |
9551316 |
acaaacaccatggctataccaagttcttggtccaaatatactttgttcatgaacacctctttccttttggtgatttctattttcatgattgttgacttta |
9551415 |
T |
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| Q |
416 |
acacaccaaaagatgttgttatggttgtgaggaacaacaaaaactactctacctttgatgatg |
478 |
Q |
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| T |
9551416 |
acacaccaaaagatgttgttatggttgtgatgaacaacaaaaactactctacctttgatgatg |
9551478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 9550997 - 9551127
Alignment:
| Q |
19 |
attgataccattattatttttacaaatctaattattttttatttacaatattgatatcctcactcaaccttttcactctcttcctttcatacaataaaaa |
118 |
Q |
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| T |
9550997 |
attgataccattactatttttacaaatctaattattttttatttaccatattgatatcctcactcaaccttttcactctcttcctttcatacaataaaaa |
9551096 |
T |
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| Q |
119 |
ttcttacaaaatcaaaatttgagttctattc |
149 |
Q |
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| T |
9551097 |
ttcttacaaaatcaaaatttgagttctattc |
9551127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 9551213 - 9551269
Alignment:
| Q |
235 |
atgttcacaagtgcatatggcttccttaatcaacaagttaccatcttgaaattgaag |
291 |
Q |
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| T |
9551213 |
atgttcacaagtgcatatggcttccttaatcaacaagttaccatcttgaaattgaag |
9551269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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