View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6006_low_7 (Length: 436)
Name: NF6006_low_7
Description: NF6006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6006_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 7715607 - 7716014
Alignment:
| Q |
19 |
aatatccccgtcaacaacataataactggaccactaaaatcccaatttaccaagctaaaaaggtgtatggtctcgatgggatctaatttgaacccaaaag |
118 |
Q |
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| T |
7715607 |
aatatccccgtcaacaacataataactggaccactaaaatcccaatttaccaagctaaaaaggtgtatggtctcgatgggatctaatttgaacccaaaag |
7715706 |
T |
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| Q |
119 |
gaaaaataaaaatatccctaacccctactaagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttatttt |
218 |
Q |
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| T |
7715707 |
gaaaaataaaaatatccctaacccctactaagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttatttt |
7715806 |
T |
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| Q |
219 |
agtaataattgtgttgtttgttttatactactccacatgacatttctaataaaaatatgttgaatacatttgcatgcatgcagtataagaaatccttcca |
318 |
Q |
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| T |
7715807 |
agtaataattgtgttgtttgttttatactactccacatgacatttctaataaaaatatgttgaatacatttgcatgcatgcagtataagaaatccttcca |
7715906 |
T |
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| Q |
319 |
cgatacccacgtggcatcttggtatatgttatttttgtgtagcactttggttgatgatattatagaatttggatcctttgatttttctttctccttcttc |
418 |
Q |
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| T |
7715907 |
cgatacccacgtggcatcttggtatatgttatttttgtgtagcactttggttgatgatattatagaatttggatcctttgatttttctttctccttcttc |
7716006 |
T |
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| Q |
419 |
tccctatg |
426 |
Q |
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| T |
7716007 |
tccctatg |
7716014 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 32961101 - 32961034
Alignment:
| Q |
148 |
aagacaaacattccagttgtatgttgttgcttttgaggaatgcaattttattcgttcccaaagtttat |
215 |
Q |
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| T |
32961101 |
aagacagacattccagttgtatcttgttgcttttgaggaatataattttatgtgttcccgaagtttat |
32961034 |
T |
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