View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6007_low_2 (Length: 345)
Name: NF6007_low_2
Description: NF6007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6007_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 26961036 - 26960713
Alignment:
| Q |
16 |
aaaggatatcagcgcatgacacagtattagggcacaaactctccagttcagtctttatggtgtcaattacatcaaaaccccttaaggaattagcatttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26961036 |
aaaggatatcagcgcatgacacagtattagggcacaaactctccagttcagtttttatagtgtcaattacatcaaaacctcttaaggaattagcatttgc |
26960937 |
T |
|
| Q |
116 |
acctgctgttttttcaccagtgaaacttgatgtatcgtctaacagtactgatgcatcacatccctatattcaaaacacaagattgatgaccaaaatgatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26960936 |
acctgctgttttttcaccagtgaaacttgatgtatcgtctaacagtactgatgcatcacatccctatattcaaaacacaagattgatgaccaaaatgatt |
26960837 |
T |
|
| Q |
216 |
ttgttg---nnnnnnnntataatatcattagttgacattttgttgcttgttaatcaagaaacgttcnnnnnnnaattcaaggaaagaaatattcttctaa |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
26960836 |
ttgttgaaaaaaataataataatatcattagttgacattttgttgcttgttaatcaagaaatgttctttttttaattcaaggaaagaaatattcttctaa |
26960737 |
T |
|
| Q |
313 |
gaaaacatacgtatatagaattat |
336 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
26960736 |
gaaaacatacgtatatataattat |
26960713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 26953348 - 26953188
Alignment:
| Q |
21 |
atatcagcgcatgacacagtattagggcacaaactctccagttcagtctttatggtgtcaattacatcaaaaccccttaaggaattagcatttgcacctg |
120 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||| | ||||| |||||| |||||||||||||||| | || || ||||||||||||| ||||| |
|
|
| T |
26953348 |
atatcagcacaagagacagtattagggcataacttctctatttcagactttattttgtcaattacatcaaagcgtctcaatgaattagcatttggacctg |
26953249 |
T |
|
| Q |
121 |
ctgttttttcaccagtgaaacttgatgtatcgtctaacagtactgatgcatcacatcccta |
181 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26953248 |
ctgttttttcacctatgaaacttgatgtatcgtccaacagtactgatgcatcacatcccta |
26953188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 26951067 - 26950907
Alignment:
| Q |
21 |
atatcagcgcatgacacagtattagggcacaaactctccagttcagtctttatggtgtcaattacatcaaaaccccttaaggaattagcatttgcacctg |
120 |
Q |
| |
|
|||||||| || || |||||||||||||| || |||| | ||||| |||||| |||||||||||||||| || || | |||||||| |||| ||||| |
|
|
| T |
26951067 |
atatcagcacaagagacagtattagggcataacttctctacttcagactttattttgtcaattacatcaaagcctctcagtgaattagcgtttggacctg |
26950968 |
T |
|
| Q |
121 |
ctgttttttcaccagtgaaacttgatgtatcgtctaacagtactgatgcatcacatcccta |
181 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
26950967 |
ctgttttttcacctctgaaacttgatgtatcgtccaaaagtactgatgcatcacatcccta |
26950907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Complemental strand, 27202141 - 27202096
Alignment:
| Q |
135 |
gtgaaacttgatgtatcgtctaacagtactgatgcatcacatccct |
180 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
27202141 |
gtgaagcttgaagtgtcgtctaacaggactgatgcatcacatccct |
27202096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 52344220 - 52344265
Alignment:
| Q |
135 |
gtgaaacttgatgtatcgtctaacagtactgatgcatcacatccct |
180 |
Q |
| |
|
|||||| ||||||| |||||||||| | |||||||||||||||||| |
|
|
| T |
52344220 |
gtgaaatttgatgtgtcgtctaacaatgctgatgcatcacatccct |
52344265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University