View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6007_low_3 (Length: 340)

Name: NF6007_low_3
Description: NF6007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6007_low_3
NF6007_low_3
[»] chr7 (11 HSPs)
chr7 (1-322)||(32944694-32945016)
chr7 (1-59)||(11509606-11509664)
chr7 (1-60)||(18148594-18148653)
chr7 (1-59)||(11509561-11509619)
chr7 (1-59)||(22530012-22530070)
chr7 (10-60)||(34706054-34706104)
chr7 (1-57)||(34706136-34706191)
chr7 (1-60)||(34706090-34706150)
chr7 (6-60)||(18148566-18148618)
chr7 (1-38)||(22529988-22530025)
chr7 (8-59)||(34706021-34706073)
[»] chr1 (15 HSPs)
chr1 (1-143)||(52273011-52273154)
chr1 (1-59)||(23633054-23633112)
chr1 (1-60)||(90247-90306)
chr1 (77-132)||(23632958-23633013)
chr1 (1-59)||(9132290-9132348)
chr1 (1-59)||(9132335-9132393)
chr1 (1-59)||(9132380-9132438)
chr1 (58-131)||(23633441-23633514)
chr1 (1-60)||(12785283-12785343)
chr1 (1-59)||(23633099-23633158)
chr1 (6-59)||(90282-90335)
chr1 (6-59)||(23633145-23633198)
chr1 (9-56)||(23633178-23633225)
chr1 (5-59)||(52272940-52272994)
chr1 (81-110)||(41137775-41137804)
[»] chr4 (17 HSPs)
chr4 (1-59)||(15703750-15703808)
chr4 (1-60)||(42597243-42597302)
chr4 (1-54)||(25127107-25127160)
chr4 (1-60)||(11150609-11150668)
chr4 (70-143)||(35462293-35462366)
chr4 (68-140)||(15242011-15242083)
chr4 (1-49)||(15703795-15703843)
chr4 (10-115)||(13885253-13885361)
chr4 (1-59)||(23973129-23973187)
chr4 (1-59)||(37838560-37838618)
chr4 (1-59)||(42597289-42597347)
chr4 (8-59)||(19612772-19612823)
chr4 (9-59)||(23973091-23973142)
chr4 (10-59)||(15703789-15703838)
chr4 (6-59)||(15703830-15703883)
chr4 (9-45)||(13885308-13885344)
chr4 (1-49)||(19612737-19612785)
[»] chr8 (10 HSPs)
chr8 (1-80)||(42145634-42145713)
chr8 (1-54)||(9882578-9882631)
chr8 (1-59)||(12577139-12577197)
chr8 (66-143)||(42145673-42145750)
chr8 (1-53)||(40387813-40387865)
chr8 (1-59)||(9882532-9882591)
chr8 (1-55)||(40387767-40387822)
chr8 (1-49)||(17289910-17289958)
chr8 (1-38)||(12577184-12577221)
chr8 (9-57)||(12577072-12577120)
[»] chr2 (9 HSPs)
chr2 (1-60)||(37379733-37379792)
chr2 (1-59)||(16092613-16092671)
chr2 (11-59)||(20264547-20264595)
chr2 (1-57)||(27401575-27401631)
chr2 (1-59)||(20264502-20264560)
chr2 (1-59)||(37379688-37379746)
chr2 (5-59)||(20179914-20179967)
chr2 (9-56)||(20264593-20264641)
chr2 (1-37)||(38991904-38991940)
[»] scaffold0024 (2 HSPs)
scaffold0024 (24-135)||(106966-107081)
scaffold0024 (11-106)||(109063-109162)
[»] chr5 (10 HSPs)
chr5 (1-59)||(29496834-29496892)
chr5 (1-59)||(29496789-29496847)
chr5 (1-59)||(29496744-29496802)
chr5 (9-59)||(39436973-39437023)
chr5 (41-96)||(28711003-28711058)
chr5 (1-59)||(29496879-29496937)
chr5 (1-60)||(19076607-19076666)
chr5 (1-45)||(14048126-14048170)
chr5 (1-49)||(23959861-23959909)
chr5 (9-45)||(39436927-39436963)
[»] chr3 (11 HSPs)
chr3 (1-59)||(52466270-52466328)
chr3 (1-143)||(3476007-3476150)
chr3 (1-59)||(3472720-3472778)
chr3 (1-143)||(52466141-52466283)
chr3 (66-143)||(17737339-17737415)
chr3 (1-60)||(39728065-39728125)
chr3 (8-59)||(15778165-15778216)
chr3 (10-59)||(3475971-3476020)
chr3 (1-38)||(3586252-3586289)
chr3 (9-59)||(3262953-3263004)
chr3 (1-59)||(5842101-5842159)
[»] chr6 (6 HSPs)
chr6 (1-59)||(9547904-9547962)
chr6 (10-60)||(19770014-19770064)
chr6 (2-52)||(27572963-27573013)
chr6 (9-59)||(19891954-19892004)
chr6 (1-59)||(28708794-28708852)
chr6 (6-59)||(3851935-3851988)
[»] scaffold0498 (2 HSPs)
scaffold0498 (67-143)||(10097-10174)
scaffold0498 (10-59)||(9995-10044)
[»] scaffold0323 (2 HSPs)
scaffold0323 (1-45)||(15544-15588)
scaffold0323 (92-143)||(15583-15634)
[»] scaffold0281 (4 HSPs)
scaffold0281 (1-59)||(862-920)
scaffold0281 (1-59)||(907-965)
scaffold0281 (1-59)||(952-1010)
scaffold0281 (1-45)||(997-1041)
[»] scaffold0139 (1 HSPs)
scaffold0139 (1-38)||(22674-22711)
[»] scaffold0679 (1 HSPs)
scaffold0679 (1-59)||(2351-2409)
[»] scaffold0449 (1 HSPs)
scaffold0449 (1-59)||(235-293)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 32944694 - 32945016
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcatc 100  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  32944694 tttatataacacatttttaaatcacacatcttcaaatagtatatctttatataacacattattttcacatcgtggaataacacatcaatttcacatcatc 32944793  T
Q  101 aaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaaaagatatgataatgaaaataacagacatttattcatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32944794 aaataattcacaaatcacacttaattaaataattcctcaattaatatctaaccaattcaaaagatatgataatgaaaataacagacatttattcatgctt 32944893  T
Q  201 ttgatcaattgat-nnnnnnntaatatgaaaatcaagtaacagttagaatatcacatgcaatttaaataaaatagacatggcaacaaggagctagcacgg 299  Q
    |||||||||||||         || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  32944894 ttgatcaattgataaaaaaaaaaaaatgaaaatcaagtaacagttagaatatcacatggaatttaaataaaatagacatggcaaccaggagcgagcacgg 32944993  T
Q  300 caatatgaattgaatggaacaac 322  Q
    |||||||||||||||||||||||    
T  32944994 caatatgaattgaatggaacaac 32945016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11509664 - 11509606
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  11509664 tttatataaaacatctttaaatcacacatcttcaaatagcacatctttatataacacat 11509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18148653 - 18148594
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    ||||||| ||||||| |||||| |||||||||||||||  ||||||||||||||||||||    
T  18148653 tttatatgacacatcgttaaatcacacatcttcaaataacacatctttatataacacatt 18148594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11509619 - 11509561
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| ||||| |||||||    
T  11509619 tttatataacacatctttaaatcacacatcttcaaataacacatccttatagaacacat 11509561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22530070 - 22530012
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||| || |||||| |||||||| |||||||||||||| |||||    
T  22530070 tttatataacacatctttatatcacacatattcaaataatacatctttatatagcacat 22530012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 34706054 - 34706104
Alignment:
Q  10 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  34706054 cacatctttatataacacatcttcaaatagcaaatctttatataacacatt 34706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34706136 - 34706191
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 57  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||    
T  34706136 tttatataacacat-tttaaatcacacatcttcaactagcacatctttatataacac 34706191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34706090 - 34706150
Alignment:
Q  1 tttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||||||| |||||||| || |||| || |||| |||||||||||||||||||||    
T  34706090 tttatataacacatttttaaatagcatcatcatcgaatattacatctttatataacacatt 34706150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 18148618 - 18148566
Alignment:
Q  6 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||||||| |||||||||  |||||||  ||||||||||||||||||||    
T  18148618 ataacacatctttatataacacat--tcaaatatcacatctttatataacacatt 18148566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22530025 - 22529988
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaata 38  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  22530025 tttatatagcacatctttaaattacacatcttcaaata 22529988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 34706021 - 34706073
Alignment:
Q  8 aacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||| || |||| |||||||  |||||||||||||||||||    
T  34706021 aacacatctttaaatagcatcatcgtcaaatatcacatctttatataacacat 34706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 52273011 - 52273154
Alignment:
Q  1 tttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcat 99  Q
    ||||||||||||||||||||||| || |||| |||||||  ||||| ||| ||| ||| | |  | ||||| ||||| | ||| ||||||||||||| ||    
T  52273011 tttatataacacatctttaaatagcatcatcgtcaaataaaacatcattaaatagcacttcaactacacatagttaattcacatatcaatttcacattat 52273110  T
Q  100 caaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    |||||||||||||||| ||||||| | ||||||||| |||||||    
T  52273111 caaataattcacaaattacacttagtcaaataattcatcaatta 52273154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23633112 - 23633054
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  23633112 tttatataacacatctttaaatcacacatcttcaaatagcacatctttgtataacacat 23633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 90247 - 90306
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    ||||| ||||||||||| |||| |||||||||||||||  ||||||||||||||||||||    
T  90247 tttatctaacacatcttgaaattacacatcttcaaataacacatctttatataacacatt 90306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 23633013 - 23632958
Alignment:
Q  77 ataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataa 132  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  23633013 ataacacatcattttcacatcatcaaataattcacaaattacacttagtcaaataa 23632958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9132348 - 9132290
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132348 tttatataacacatctttaaatcccacaacttcaaataacacatctttatataacacat 9132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9132393 - 9132335
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||||||  |||| |||||||||  |||||||||||||||||||    
T  9132393 tttatataacacatctttaaatcgcacaacttcaaataacacatctttatataacacat 9132335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9132438 - 9132380
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||| | ||||||  |||||||||||||||| |||||||||||||||||||    
T  9132438 tttatataacacgtatttaaaccacacatcttcaaatagcacatctttatataacacat 9132380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 23633514 - 23633441
Alignment:
Q  58 attattttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaata 131  Q
    |||| ||||||||| | ||||| |||||||||| |||||||||||||||| ||||||| ||||||  |||||||    
T  23633514 attaatttcacatcttcaaatagcacatcaattacacatcatcaaataatacacaaattacacttctttaaata 23633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12785283 - 12785343
Alignment:
Q  1 tttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 60  Q
    |||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  12785283 tttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 12785343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23633158 - 23633099
Alignment:
Q  1 tttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||||||| || | || ||||||| ||||||||||||||||||||    
T  23633158 tttatataacacatctttaaatagcatcgtcatcaaatattacatctttatataacacat 23633099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 90282 - 90335
Alignment:
Q  6 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||| ||||||||| || | |||| |||||||||||||||||||    
T  90282 ataacacatctttatataacacatttttatatagcacatctttatataacacat 90335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 23633198 - 23633145
Alignment:
Q  6 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||    
T  23633198 ataacacatctttatataacatatctttaaatagcaaatctttatataacacat 23633145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 23633225 - 23633178
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatctttatataaca 56  Q
    ||||||||||| ||||||||||||| ||||  ||||||||||||||||    
T  23633225 acacatctttatataacacatcttcgaataacacatctttatataaca 23633178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 52272940 - 52272994
Alignment:
Q  5 tataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||| || ||||||||||||| |  |||||||||||| ||||||    
T  52272940 tataacacatctttatatcacacatcttcaaacatcacatctttatatgacacat 52272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 41137804 - 41137775
Alignment:
Q  81 cacatcaatttcacatcatcaaataattca 110  Q
    ||||||||||||||||||||||||||||||    
T  41137804 cacatcaatttcacatcatcaaataattca 41137775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15703750 - 15703808
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  15703750 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataacacat 15703808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 42597302 - 42597243
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  42597302 tttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 42597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25127160 - 25127107
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 54  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25127160 tttatataacacatctttaaatcacacatcttcaaataatacatctttatataa 25127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11150609 - 11150668
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||||||||||||||| |||||||||||||||  |||| |||||||||||||||    
T  11150609 tttatataacacatctttaaatcacacatcttcaaataacacatttttatataacacatt 11150668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 35462366 - 35462293
Alignment:
Q  70 tcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||| | | | ||||||||| |||||||    
T  35462366 tcgttaattaacacatcaattttacatcatcaaataattcacaaattacaataagtcaaataattcatcaatta 35462293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 15242083 - 15242011
Alignment:
Q  68 catcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaa 140  Q
    |||| ||||||| ||| ||| ||  ||||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  15242083 catcattaaatagcacttcagttatacatcatcaaataattcacaaattacacttaatcaaataattcatcaa 15242011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15703795 - 15703843
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatcttta 49  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  15703795 tttatataacacatcttcaaataacacatcttcaaataacacatcttta 15703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 13885361 - 13885253
Alignment:
Q  10 cacatctttaaata---acacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcatcaaataa 106  Q
    ||||||||||||||   ||||||||| ||||   ||||||| | ||| ||||| | ||||  ||| | |||||| ||||||||||||||||||||| |||    
T  13885361 cacatctttaaatagtcacacatctttaaatcacacatcttcaaatagcacatcaatttcttatcatcaaataatacatcaatttcacatcatcaagtaa 13885262  T
Q  107 ttcacaaat 115  Q
    |||||||||    
T  13885261 ttcacaaat 13885253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23973129 - 23973187
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||  ||||||||| ||||| |||||||| ||||    
T  23973129 tttatataacacatctttaaatcacacaatttcaaatagcacatcattatataatacat 23973187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37838618 - 37838560
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37838618 tttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37838560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42597347 - 42597289
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  42597347 tttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 42597289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 19612823 - 19612772
Alignment:
Q  8 aacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||| | |||||| ||||||  |||||||||||||||||||    
T  19612823 aacacatctttaaatcatacatctacaaatatcacatctttatataacacat 19612772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 23973091 - 23973142
Alignment:
Q  9 acacatctttaaataaca-catcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||||    
T  23973091 acacatctttaaataacatcatcatcaaatatcacatctttatataacacat 23973142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 15703789 - 15703838
Alignment:
Q  10 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||| ||||||||||||||||||  ||||||| | |||||||||    
T  15703789 cacatctttatataacacatcttcaaataacacatcttcaaataacacat 15703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 15703830 - 15703883
Alignment:
Q  6 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||| ||| |||||||||||  |||||||| |||| |||||    
T  15703830 ataacacatctttaaatcacaaatcttcaaataacacatctttgtataccacat 15703883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 13885344 - 13885308
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatc 45  Q
    |||||||||||||| |||||||||||||||| |||||    
T  13885344 acacatctttaaatcacacatcttcaaatagcacatc 13885308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19612785 - 19612737
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatcttta 49  Q
    |||||||||||||| ||||||| | |||||||||||||  |||||||||    
T  19612785 tttatataacacatatttaaatcagacatcttcaaataacacatcttta 19612737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 42145634 - 42145713
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataa 80  Q
    ||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||||| ||||||||||| | ||||||    
T  42145634 tttatattacacatctttaaatcacacatattcaaataacacatctttatataacacatcattttcacatcatcaaataa 42145713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9882578 - 9882631
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataa 54  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  9882578 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataa 9882631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12577139 - 12577197
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||    
T  12577139 tttatataacacatctttaaatcacacatcttcaaatagcacatatttatataatacat 12577197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 42145673 - 42145750
Alignment:
Q  66 cacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||| | || ||||||| | ||||||||| |||||||    
T  42145673 cacatctttatataacacatcattttcacatcatcaaataattcatacattacacttagtcaaataattcatcaatta 42145750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40387813 - 40387865
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatata 53  Q
    |||||||||| ||||||||||| |||||||||||||||  |||||||||||||    
T  40387813 tttatataactcatctttaaatcacacatcttcaaataacacatctttatata 40387865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9882532 - 9882591
Alignment:
Q  1 tttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||| ||||| || |||| ||||||| ||||||||||||||||||||    
T  9882532 tttatataacacatcttcaaatagcatcatcatcaaatattacatctttatataacacat 9882591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40387767 - 40387822
Alignment:
Q  1 tttatataacacatctttaaa-taacacatcttcaaatagtacatctttatataac 55  Q
    ||||||| ||||||||||||| | |||||||||||||||| |||||||||||||||    
T  40387767 tttatatgacacatctttaaaatcacacatcttcaaatagcacatctttatataac 40387822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17289910 - 17289958
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatcttta 49  Q
    |||||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  17289910 tttatagaacacatctttaaatcacacatcttcaaacattacatcttta 17289958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12577184 - 12577221
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaata 38  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  12577184 tttatataatacatctttaaatcacacatcttcaaata 12577221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 12577072 - 12577120
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatctttatataacac 57  Q
    ||||||||||||||||| |||||| | |||| |||||||| ||||||||    
T  12577072 acacatctttaaataactcatctttatatagcacatctttgtataacac 12577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37379733 - 37379792
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  37379733 tttatataacacatctttaaatcatacatcttcaaatagtacatatttatataacacatt 37379792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16092613 - 16092671
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||    
T  16092613 tttatataacacatctttaaatcaaacatcttcaaataacacatctttatatagcacat 16092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 20264595 - 20264547
Alignment:
Q  11 acatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  20264595 acatccttaaatcacacatcttcaaatagcacatctttatataacacat 20264547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27401631 - 27401575
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacac 57  Q
    ||||||| |||||||||||||| |||||||||||||||  |||| ||||||||||||    
T  27401631 tttatatgacacatctttaaatcacacatcttcaaataacacatatttatataacac 27401575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20264560 - 20264502
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| | | || ||||||||  |||||||||||||||||||    
T  20264560 tttatataacacatctttaaatcataaatattcaaataacacatctttatataacacat 20264502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37379688 - 37379746
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||| ||||||| ||||||||| |||||||||||||||  |||| ||||||||||||||    
T  37379688 tttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacat 37379746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 20179914 - 20179967
Alignment:
Q  5 tataacacatctttaaat-aacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  20179914 tataacacatctttatatcaacacatcttcaaata--acatctttatataacacat 20179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 20264641 - 20264593
Alignment:
Q  9 acacatctttaaataaca-catcttcaaatagtacatctttatataaca 56  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||    
T  20264641 acacatctttaaataacatcatcgtcaaatatcacatctttatataaca 20264593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38991904 - 38991940
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaat 37  Q
    |||||||||||||||||||||| |||| |||||||||    
T  38991904 tttatataacacatctttaaatcacacttcttcaaat 38991940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 106966 - 107081
Alignment:
Q  24 acacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcaca 119  Q
    |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||||||||||| |||||||| |||    
T  106966 acacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcatcaaataactcacaaattaca 107065  T
Q  120 cttaattaaataattc 135  Q
    |||| | |||||||||    
T  107066 cttagtcaaataattc 107081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 109063 - 109162
Alignment:
Q  11 acatctttaaataacacatcttcaaatagtacatctttatataacacattatt----ttcacatcgttaaataacacatcaatttcacatcatcaaataa 106  Q
    |||||||||||| |||||||||||||||| | || ||||||||||||||  ||    | |||||  | |||||||||||||||||||||||| |||||||    
T  109063 acatctttaaatcacacatcttcaaatagcaaatatttatataacacatctttaaaatacacattatcaaataacacatcaatttcacatcagcaaataa 109162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29496892 - 29496834
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  29496892 tttatataacacatctttaaatcacacaacttcaaatagcacatctttatataacacat 29496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29496847 - 29496789
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||    
T  29496847 tttatataacacatctttaaatcacacaacttcaaatagcacatgtttatataacacat 29496789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29496802 - 29496744
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||| ||||||||||||    
T  29496802 tttatataacacatctttaaatcacacaacttcaaataacacatctatatataacacat 29496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39437023 - 39436973
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||||    
T  39437023 acacatctttaaataacacatcttcatatggtagatctttatataacacat 39436973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 28711058 - 28711003
Alignment:
Q  41 acatctttatataacacattattttcacatcgttaaataacacatcaatttcacat 96  Q
    ||||| ||| ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  28711058 acatcattaaataacacatcaatttcacatcgttaaacaacacatcaatttcacat 28711003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29496937 - 29496879
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||| ||||| ||||||||| |||||  |||| ||||||||||||||    
T  29496937 tttatataacacatctctaaatcacacatctttaaataacacatatttatataacacat 29496879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19076607 - 19076666
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    |||| ||||||| ||||||||| |||||||||||| ||| |||||| |||| ||||||||    
T  19076607 tttaaataacacgtctttaaattacacatcttcaagtagcacatctctatacaacacatt 19076666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14048126 - 14048170
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatc 45  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||    
T  14048126 tttatataacacatctttaaagcacacatcttcacatagcacatc 14048170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23959909 - 23959861
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatcttta 49  Q
    |||||||||||||| ||||||| | ||||||||||||||  ||||||||    
T  23959909 tttatataacacatttttaaatcatacatcttcaaatagcgcatcttta 23959861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 39436963 - 39436927
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatc 45  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  39436963 acacatctttaaataacacatcgtcaaataatacatc 39436927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52466328 - 52466270
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  52466328 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataccacat 52466270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3476007 - 3476150
Alignment:
Q  1 tttatataacacatctttaaataaca-catcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcat 99  Q
    ||||||||||||||||||||||| || | || | |||||  ||||| ||| ||| ||| | | || ||||| ||||| | ||  ||||||||||||||||    
T  3476007 tttatataacacatctttaaatagcatcgtcgttaaataaaacatcattaaatagcacttcagttacacatagttaattcacgtatcaatttcacatcat 3476106  T
Q  100 caaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    || ||| ||||||||||||||||| | ||||||||| |||||||    
T  3476107 catatagttcacaaatcacacttagtcaaataattcatcaatta 3476150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3472778 - 3472720
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||||| |||||||||||    
T  3472778 tttatataacacatctttaaatcacacatctttaaatagcacatcttcatataacacat 3472720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 52466283 - 52466141
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacattattttcacatcgttaaataacacatcaatttcacatcatc 100  Q
    |||||||| ||||||||||||| | |||||||||||||  |||| ||||||||||||||| ||||||| || | | ||||  ||  |||| ||| | |||    
T  52466283 tttatataccacatctttaaatcatacatcttcaaataacacatttttatataacacatttttttcacgtcatcagataattcacaaattacacttaatc 52466184  T
Q  101 aaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    ||||||||||  ||| ||||||  |||||||| || |||||||    
T  52466183 aaataattcatcaattacacttcgttaaataactcatcaatta 52466141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 17737339 - 17737415
Alignment:
Q  66 cacatcgttaaataacacatcaatttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    |||||||||||||| |  |||||||||||||||||||||||||||||||| | ||||||| ||||| ||| |||||||    
T  17737339 cacatcgttaaata-cttatcaatttcacatcatcaaataattcacaaattatacttaatcaaatatttcatcaatta 17737415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39728125 - 39728065
Alignment:
Q  1 tttatataacacatctttaaataacacatcttca-aatagtacatctttatataacacatt 60  Q
    |||||||||||||||||||||| ||||||||||| || |  ||||||||||||||||||||    
T  39728125 tttatataacacatctttaaatcacacatcttcagaaaaacacatctttatataacacatt 39728065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 15778216 - 15778165
Alignment:
Q  8 aacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||| ||||||| |||||||||||||||  |||||||||||||||||||    
T  15778216 aacacatttttaaatcacacatcttcaaataagacatctttatataacacat 15778165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 3475971 - 3476020
Alignment:
Q  10 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||||||    
T  3475971 cacatctttatataacacatctttaaatcatacatctttatataacacat 3476020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3586252 - 3586289
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaata 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3586252 tttatataacacatctttaaatcacacatcttcaaata 3586289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 3263004 - 3262953
Alignment:
Q  9 acacatctttaaataacac-atcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||| ||  ||||||| ||||||||||||||||||||    
T  3263004 acacatctttaaataacaccattgtcaaatattacatctttatataacacat 3262953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5842101 - 5842159
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  5842101 tttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 5842159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9547904 - 9547962
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||||| ||||||  || ||||||||||||||||    
T  9547904 tttatataacacatctttaaatcacacatctacaaataacacgtctttatataacacat 9547962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 19770064 - 19770014
Alignment:
Q  10 cacatctttaaataacacatcttcaaatagtacatctttatataacacatt 60  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  19770064 cacatctttaaattacacatcttcaaataacacatctttatataacacatt 19770014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 27573013 - 27572963
Alignment:
Q  2 ttatataacacatctttaaataacacatcttcaaatagtacatctttatat 52  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  27573013 ttatataacacatctttaaaacacacatcttcaaatagcacatctttatat 27572963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 19891954 - 19892004
Alignment:
Q  9 acacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  19891954 acacatctttaaatcacacattttcaaataacacatctttatataacacat 19892004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28708794 - 28708852
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  28708794 tttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 28708852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 3851988 - 3851935
Alignment:
Q  6 ataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||||||||||| | ||   ||||||||||||| |||||    
T  3851988 ataacacatctttaaataacacatctttatatgacacatctttatatagcacat 3851935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 10097 - 10174
Alignment:
Q  67 acatcgttaaataacacatcaa-tttcacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    |||||||||| ||||| ||||| ||| ||||||||||||||||||||||| | |||| || ||||||||| |||||||    
T  10097 acatcgttaattaacatatcaaattttacatcatcaaataattcacaaattatacttcatcaaataattcatcaatta 10174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 9995 - 10044
Alignment:
Q  10 cacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||    
T  9995 cacatctttaaatcacacatctttaaataacacatctttatataacacat 10044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15544 - 15588
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatc 45  Q
    |||||||||||||||||||||| |||||||||||||||| |||||    
T  15544 tttatataacacatctttaaattacacatcttcaaatagcacatc 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 15583 - 15634
Alignment:
Q  92 cacatcatcaaataattcacaaatcacacttaattaaataattcctcaatta 143  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| | |||||||    
T  15583 cacatcatcaaataattcacaaattacatttaatcaaataatccatcaatta 15634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 862 - 920
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||||||| |||||| | ||||||  ||||||||||| |||||||    
T  862 tttatataacacatctttaaatcacacatatgcaaataacacatctttatagaacacat 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 907 - 965
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||| ||||||||||||||| | |||||||||||||  |||| ||||||||||||||    
T  907 tttatagaacacatctttaaatcaaacatcttcaaataacacatatttatataacacat 965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 952 - 1010
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||||||||||||||||| ||| ||||||||| |||||  |||| ||||||||||||||    
T  952 tttatataacacatctttgaatcacacatctttaaataacacatttttatataacacat 1010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 997 - 1041
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatc 45  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||    
T  997 tttatataacacatctttaaatcacacattttcaaatagcacatc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22674 - 22711
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaata 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22674 tttatataacacatctttaaatcacacatcttcaaata 22711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0679 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2409 - 2351
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    ||||||||||||||||||  ||| |||||||| ||||   |||||||||||||||||||    
T  2409 tttatataacacatctttgtatagcacatctttaaatctcacatctttatataacacat 2351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 293 - 235
Alignment:
Q  1 tttatataacacatctttaaataacacatcttcaaatagtacatctttatataacacat 59  Q
    |||| |||||||||||||| ||| ||||||| ||||||  ||||||| |||||||||||    
T  293 tttagataacacatctttatatagcacatctacaaatatcacatcttcatataacacat 235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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