View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6008_high_7 (Length: 285)
Name: NF6008_high_7
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 52967921 - 52968112
Alignment:
| Q |
22 |
tacatctcatctcacaattcaacatctttatcatttgattcccaaattctttcaacccatacgtggccctacattgccatgctatttcttatccaaaaca |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52967921 |
tacatctcatctcacagttcaacaactttatcatttgattcccaaattctttcaacctatacgtggccctacattgccatgctatttcttatccaaaaca |
52968020 |
T |
|
| Q |
122 |
aatctttgtttcagaatcaatttacagttacactttagcattagaacaagcaaaagttgacttaatctttccttccacatgtatcttaattt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52968021 |
aatctttgtttcagaatcaatttacagttacactttagcattagaacaagcaaaagttgacttaatctttccttccacatgtatcttaattt |
52968112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 52961964 - 52962089
Alignment:
| Q |
22 |
tacatctcatctcacaattcaacatctttatcatttgattcccaaattctttcaacccatacgtggccctacattgccatgctatttcttatccaaaaca |
121 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52961964 |
tacatctcatctcacagttcaacaactttatcatttgattcccaaattctttcaacctatacgtggccctacattgccatgctatttcttatccaaaaca |
52962063 |
T |
|
| Q |
122 |
aatctttgtttcagaatcaatttaca |
147 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
52962064 |
aatctttgtttcagaatcaatttaca |
52962089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 52968108 - 52968144
Alignment:
| Q |
249 |
aatttgattctgaaattaatcataaaataaaattcct |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52968108 |
aatttgattctgaaattaagcataaaataaaattcct |
52968144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University