View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6008_low_1 (Length: 641)

Name: NF6008_low_1
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6008_low_1
NF6008_low_1
[»] chr5 (4 HSPs)
chr5 (339-498)||(37977981-37978140)
chr5 (507-631)||(37978726-37978853)
chr5 (17-96)||(37977653-37977732)
chr5 (396-498)||(10183157-10183259)
[»] chr7 (1 HSPs)
chr7 (396-498)||(39063350-39063452)
[»] chr6 (1 HSPs)
chr6 (396-498)||(18877911-18878013)
[»] chr3 (1 HSPs)
chr3 (396-498)||(33518622-33518724)
[»] scaffold1521 (1 HSPs)
scaffold1521 (431-477)||(302-350)
[»] scaffold0152 (2 HSPs)
scaffold0152 (431-477)||(30369-30417)
scaffold0152 (431-477)||(31160-31208)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 339 - 498
Target Start/End: Original strand, 37977981 - 37978140
Alignment:
Q  339 catggtggagatagctgattgcgttctaagacaaacaagttccactaaaacatgtgccctttataactcttttaattgaaattgctaatttaattgctag 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37977981 catggtggagatagctgattgcgttctaagacaaacaagttccactaaaacatgtgccctttataactcttttaattgaaattgctaatttaattgccag 37978080  T
Q  439 actctatgattctaacgtacataattcattgcaataaaaaagtttttacatttactatga 498  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  37978081 actctatgattctaacgtatataatttattgcaataaaaaagtttttacatttactatga 37978140  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 507 - 631
Target Start/End: Original strand, 37978726 - 37978853
Alignment:
Q  507 tagataaattacctcatgcatatctc---gagttaagtctaattcgcccagatctttctttttgacaatcggctttgtactagcaatggttctttcattc 603  Q
    ||||||||||| |||||| ||||||    |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||     
T  37978726 tagataaattagctcatgtatatctgaaggagttaagtctaattcgcccagatctttctttttgacatttggctttgcactagcaatggttctttcatta 37978825  T
Q  604 ttacacaacttttggctgaacttctctg 631  Q
    ||||||||||||||||||| ||||||||    
T  37978826 ttacacaacttttggctgagcttctctg 37978853  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 37977653 - 37977732
Alignment:
Q  17 aggacaaatccttaatgtgtctttgtccaaacacatattagtagtttaggagacaactttatacttaatttaaaattgat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37977653 aggacaaatccttaatgtgtctttgtccaaacacatattagtagtttaggagacaactttatacttaacttaaaattgat 37977732  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 10183157 - 10183259
Alignment:
Q  396 cctttataactcttttaattgaaattgctaatttaattgctagactctatg-attctaacgtacataattcattgcaataaaaaagtttttacatttact 494  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||  ||||||| |||||||||||||||||||     
T  10183157 cctttataactcttttaattgaaatggctaatttaattgctagactctatgaattctaacgtgcataatt-tttgcaatcaaaaagtttttacatttacc 10183255  T
Q  495 atga 498  Q
    ||||    
T  10183256 atga 10183259  T

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Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 39063452 - 39063350
Alignment:
Q  396 cctttataactcttttaattgaaattgctaatttaattgctagactctatg-attctaacgtacataattcattgcaataaaaaagtttttacatttact 494  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||  ||||||| |||||||||||||||||||     
T  39063452 cctttataactcttttaattgaaatggctaatttaattgctagactctatgaattctaacgtgcataatt-tttgcaatcaaaaagtttttacatttacc 39063354  T
Q  495 atga 498  Q
    ||||    
T  39063353 atga 39063350  T

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Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 18877911 - 18878013
Alignment:
Q  396 cctttataactcttttaattgaaattgctaatttaattgctagactctatg-attctaacgtacataattcattgcaataaaaaagtttttacatttact 494  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||  ||||||| |||||||||||||||||||     
T  18877911 cctttataactcttttaattgaaatggctaatttaattgctagactctatgaattctaacgtgcataatt-tttgcaatcaaaaagtttttacatttacc 18878009  T
Q  495 atga 498  Q
    ||||    
T  18878010 atga 18878013  T

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Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 33518724 - 33518622
Alignment:
Q  396 cctttataactcttttaattgaaattgctaatttaattgctagactctatg-attctaacgtacataattcattgcaataaaaaagtttttacatttact 494  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||  ||||||| |||||||||||||||||||     
T  33518724 cctttataactcttttaattgaaatggctaatttaattgctagactctatgaattctaacgtgcataatt-tttgcaatcaaaaagtttttacatttacc 33518626  T
Q  495 atga 498  Q
    ||||    
T  33518625 atga 33518622  T

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Target: scaffold1521 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1521
Description:

Target: scaffold1521; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 477
Target Start/End: Original strand, 302 - 350
Alignment:
Q  431 attgctagactctatga--ttctaacgtacataattcattgcaataaaa 477  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  302 attgctagactctgtgaatttctaacgtacataattcattgcaataaaa 350  T

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Target: scaffold0152 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 30417 - 30369
Alignment:
Q  431 attgctagactctatga--ttctaacgtacataattcattgcaataaaa 477  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  30417 attgctagactctgtgaatttctaacgtacataattcattgcaataaaa 30369  T

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Target: scaffold0152; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 31208 - 31160
Alignment:
Q  431 attgctagactctatga--ttctaacgtacataattcattgcaataaaa 477  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  31208 attgctagactctgtgaatttctaacgtacataattcattgcaataaaa 31160  T

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