View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_10 (Length: 249)
Name: NF6008_low_10
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21622831 - 21623072
Alignment:
| Q |
1 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaa |
100 |
Q |
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| T |
21622831 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaa |
21622930 |
T |
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| Q |
101 |
gttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatg |
200 |
Q |
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| T |
21622931 |
gttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatg |
21623030 |
T |
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| Q |
201 |
gatatataaaatgctttcatatatcttttcggatcctatgct |
242 |
Q |
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| T |
21623031 |
gatatataaaatactttcatatatcttttcggatcctatgct |
21623072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21644545 - 21644786
Alignment:
| Q |
1 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaa |
100 |
Q |
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| T |
21644545 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaa |
21644644 |
T |
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| Q |
101 |
gttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatg |
200 |
Q |
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| T |
21644645 |
gttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatg |
21644744 |
T |
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| Q |
201 |
gatatataaaatgctttcatatatcttttcggatcctatgct |
242 |
Q |
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| T |
21644745 |
gatatataaaatactttcatatatcttttcggatcctatgct |
21644786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 21715184 - 21714990
Alignment:
| Q |
1 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggtt--ggaggaagatctccactg |
98 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21715184 |
ctttttgttgtgttctatgtttccagaagattgcaacatatcaatcgatgatttaatcctatatgcaataggactaggtgtgggaggaagatctccactg |
21715085 |
T |
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| Q |
99 |
aagttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgca |
193 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
21715084 |
aagttatcaaggagtttggttcaagtcggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaatgcgtgaagatgca |
21714990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 21704332 - 21704526
Alignment:
| Q |
1 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggtt--ggaggaagatctccactg |
98 |
Q |
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||||||| |||||||||| ||||||||||||| ||||||||| | || ||||||||| |||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
21704332 |
ctttttgatgtgttctatgtttccagaagattacaacatatcaatagaagatttaatcatatatgcaattggactgggtgtgggaggaagacatccactg |
21704431 |
T |
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| Q |
99 |
aagttatcaaggagtttggttcaagacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgca |
193 |
Q |
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||| ||||||||| |||| |||||| | |||| |||| ||| ||||||| |||||||||||||| ||| |||||||| || ||||||||||||| |
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| T |
21704432 |
aagatatcaaggattttgattcaagttgccatagacaaacttgtagaatcttgtttgctgatgcctgctgaagacatggaatgtgtgaagatgca |
21704526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21596848 - 21596916
Alignment:
| Q |
1 |
ctttttgttgtgttctatatttccagaagattgcaacatatcgaccgatgatttaatcctatatgcaat |
69 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||| |
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| T |
21596848 |
ctttttgttgtgttctatgtttccagaagattgcaacatatcgaccgacgatttaatcatatatccaat |
21596916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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