View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_2 (Length: 506)
Name: NF6008_low_2
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_2 |
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| [»] chr3 (9 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Original strand, 21644061 - 21644548
Alignment:
| Q |
19 |
cagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644061 |
cagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagt |
21644160 |
T |
|
| Q |
119 |
agatgatttatggaatattcttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagat |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644161 |
agatgatttatggaatatccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagat |
21644260 |
T |
|
| Q |
219 |
gaatcctggactttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644261 |
gaatcctggactttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggac |
21644360 |
T |
|
| Q |
319 |
tggccctagctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggagttcatcggcatttga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21644361 |
tggccctagctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttga |
21644460 |
T |
|
| Q |
419 |
tgatcacgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21644461 |
tgatcacgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
21644548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Original strand, 21622348 - 21622834
Alignment:
| Q |
20 |
agacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21622348 |
agacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttatggttgagtttgacagaaaataaacgaattcttgttatagta |
21622447 |
T |
|
| Q |
120 |
gatgatttatggaatattcttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatg |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21622448 |
gatgatttatggaatatccttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatg |
21622547 |
T |
|
| Q |
220 |
aatcctggactttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622548 |
aatcctggactttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggact |
21622647 |
T |
|
| Q |
320 |
ggccctagctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggagttcatcggcatttgat |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21622648 |
ggccctagctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttgat |
21622747 |
T |
|
| Q |
420 |
gatcacgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21622748 |
gatcacgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
21622834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 128 - 506
Target Start/End: Complemental strand, 21715559 - 21715181
Alignment:
| Q |
128 |
atggaatattcttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctgg |
227 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| ||||||||||||||||||||| |
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|
| T |
21715559 |
atggaaaatccttgtaaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctcttatctaaagatgaatcctgg |
21715460 |
T |
|
| Q |
228 |
actttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggactggccctag |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21715459 |
actttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtgtgccacgagaactctgcgataaatgtaagggactgcccctag |
21715360 |
T |
|
| Q |
328 |
ctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggagttcatcggcatttgatgatcacga |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
21715359 |
ctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcagcatttgatgatcacga |
21715260 |
T |
|
| Q |
428 |
cgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21715259 |
tgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
21715181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 128 - 506
Target Start/End: Original strand, 21703957 - 21704335
Alignment:
| Q |
128 |
atggaatattcttgtaaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctgg |
227 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||| |||| | ||| |||||| || | ||||| ||| |
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|
| T |
21703957 |
atggaaaatccttgtaaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaattattaatctggggctcttatctgaaaacgaatcttgg |
21704056 |
T |
|
| Q |
228 |
actttgttccaaaagcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggactggccctag |
327 |
Q |
| |
|
||||||||||||||||||||| | |||||||| | || || || ||| ||| |||| |||||| ||||||||| |||||||||| |||||| | |||| |
|
|
| T |
21704057 |
actttgttccaaaagcatgcagatattactgatgaattctctaaatcattgggtggtgtgccacatgaactctgcaataaatgtaaaggactgcctctag |
21704156 |
T |
|
| Q |
328 |
ctattgtaactatggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggagttcatcggcatttgatgatcacga |
427 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||| || || |||||||||||||||||||||||| ||||| |||||| |||| ||| ||| ||||||||||| |
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|
| T |
21704157 |
caattgtaactgtggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacga |
21704256 |
T |
|
| Q |
428 |
cgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctcttt |
506 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21704257 |
tgaaggagtgagagatgctttaagttgtcttgaactaagctatacatatttacaaaacaaggaagcagagttgctcttt |
21704335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 391 - 506
Target Start/End: Original strand, 21596736 - 21596851
Alignment:
| Q |
391 |
ataagatgaggagttcatcggcatttgatgatcacgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaagga |
490 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21596736 |
ataagatgaggaattcatcggcatttgatgatcacgatgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaagga |
21596835 |
T |
|
| Q |
491 |
agcagagttgctcttt |
506 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21596836 |
agcagagttgctcttt |
21596851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 21715728 - 21715614
Alignment:
| Q |
19 |
cagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagt |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
21715728 |
cagacatgttaaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttgaaagaaaataaacgaattcttgttataat |
21715629 |
T |
|
| Q |
119 |
agatgatttatggaa |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21715628 |
tgatgatttatggaa |
21715614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 21703793 - 21703902
Alignment:
| Q |
25 |
tgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacag-aaaataaacgaattcttgttatagtagatg |
123 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| | |||||||||||| |||||||||||| ||| || |||| |||||||||||||| |||||||| | |
|
|
| T |
21703793 |
tgttaaacttgaaactcagtgaagaagatgaagacgaaagagcacaacgtttgtggttgagtctgaaagaaaaaaaaacgaattcttgtcatagtagacg |
21703892 |
T |
|
| Q |
124 |
atttatggaa |
133 |
Q |
| |
|
|||| ||||| |
|
|
| T |
21703893 |
atttgtggaa |
21703902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 319
Target Start/End: Original strand, 21115418 - 21115595
Alignment:
| Q |
142 |
taaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgttccaaaa |
241 |
Q |
| |
|
|||||||||||||| |||| || || || |||||||||||||||||||| |||||| | | ||| || ||| |||||||||| ||||| || |||||||| |
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|
| T |
21115418 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
21115517 |
T |
|
| Q |
242 |
gcatgcaaagattactgacaagttttccaagtcaatggatggtttgccacgagaactctgcgataaatgtaagggact |
319 |
Q |
| |
|
| ||||| ||| |||| | | ||||||| | |||||||| ||||||| ||| ||||| || | ||||| ||||| |
|
|
| T |
21115518 |
gtttgcaagaattgatgacgaatactccaagttattggatggtgtgccacgggaagtctgcaatgagtgtaatggact |
21115595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 21115235 - 21115348
Alignment:
| Q |
19 |
cagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagt |
118 |
Q |
| |
|
|||| ||||||||||||||| | | |||||||| |||||||||||||||||||| || |||||| |||| | | |||| || ||||||||| | ||||| |
|
|
| T |
21115235 |
cagatatgttaaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttgtgtttaaaacaaaagaagcgaattcttataatagt |
21115334 |
T |
|
| Q |
119 |
agatgatttatgga |
132 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
21115335 |
ggacgatctatgga |
21115348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 23010604 - 23010517
Alignment:
| Q |
45 |
gaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacagaaaataaacgaattcttgttatagtagatgatttatgga |
132 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||||||||| |||||| || || ||||| || ||||||||||||||||||| |
|
|
| T |
23010604 |
gaagaaagtgatgagggaagagcacaacgtttgtggttgagtttgaaagaaaagaagcggattctcgtaatagtagatgatttatgga |
23010517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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