View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_3 (Length: 363)
Name: NF6008_low_3
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 52968109 - 52968445
Alignment:
| Q |
15 |
atttgattctgaaattaatattaaaataaaattcctgctagtgatagaatttagaaaa-gttaaaaggaaagtgattgaagttgaaaagcaacttgtgtt |
113 |
Q |
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| T |
52968109 |
atttgattctgaaattaagcataaaataaaattcctgccagtgatagaatttaaaaaaagttaaaaggaaagtgattgaagttgaaaagcaacttgtgtt |
52968208 |
T |
|
| Q |
114 |
acttatatatcttgcagatcattcaaacttgtgaaattatattgatggttatatacaagtgttaaactaaaaattatagaaaatgttggttgttaaaatt |
213 |
Q |
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| T |
52968209 |
acttatatatcttgcagatcattcaaacttgtgaaatt-----gatggttatatacaagtgttaaactaaaaattatagaaaatgttggttgttaaaatt |
52968303 |
T |
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| Q |
214 |
aattctattaaacaaatgaaatat----atattgtgatcaagtttagatcctggttctggttagcctttcatggaagttctttttaattactgtccatta |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52968304 |
aattctattaaacaaatgaaatatatatatattgtgatcaagtttagatcctggttctggttagcctttcatggaagttctatttaattactgtccatta |
52968403 |
T |
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| Q |
310 |
taatgtagcttagactgatgcaatgtactattatttgagtat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
52968404 |
taatgtagcttagactgatgcaatgtactattatttgagtat |
52968445 |
T |
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