View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_4 (Length: 356)
Name: NF6008_low_4
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 2 - 348
Target Start/End: Complemental strand, 39296250 - 39295904
Alignment:
| Q |
2 |
tgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgt |
101 |
Q |
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| T |
39296250 |
tgatcgtgagaacgagagaatatactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctgt |
39296151 |
T |
|
| Q |
102 |
tttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctaga |
201 |
Q |
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| T |
39296150 |
tttgattctaagagaaacacaaggtttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctagg |
39296051 |
T |
|
| Q |
202 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296050 |
atgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacca |
39295951 |
T |
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| Q |
302 |
agaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39295950 |
agaacagtcctttgtacactgtgcaaccttgatccagcagaataatc |
39295904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 39289368 - 39289022
Alignment:
| Q |
1 |
ttgatcgtgagaacaagagaataaactagccatgctattgaagaaacaccgcagccactatgaattcctccaatacattgaaggaatgaagttattgctg |
100 |
Q |
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||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39289368 |
ttgatcgtgagtacgagagaataaactagccatgctatcgaagaaacgccgcagccactatgaattcctccaatacattgaagaaatgaagttattgctg |
39289269 |
T |
|
| Q |
101 |
ttttgattctaagagaaacacaaggattccctatagttttgacaacaaaccagtaaagaagtcttaaaaccacctcgcttcgacatagtgttaaagctag |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
39289268 |
ttttgattctaagagaaacacaaggcttccctatagttttgacaacaaaccagtaaagaagtcttaaaaccgcctcacttcgacatagtgttaaagctag |
39289169 |
T |
|
| Q |
201 |
aatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaaactgaaagagcaagtgctaacatattcaaggttatgcaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289168 |
aatgttaccaatggagaaaagtgtagctcttgatttaccatatggaaaatgccctaaagctgaaagagcaagtgctaacatattcaaggttatgcaaacc |
39289069 |
T |
|
| Q |
301 |
aagaacagtcctttgtacactgtgcaaccttgatccagcagaataat |
347 |
Q |
| |
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||||| ||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
39289068 |
aagaatagtcctttgtaaactgtgaaaccttgatctagcagaataat |
39289022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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