View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_5 (Length: 338)
Name: NF6008_low_5
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 985107 - 984782
Alignment:
| Q |
1 |
tagagatgccaaatatggcgaccaaattggtttttgttgtctctaatttccatagttgtttcactctctttagtagttacaaatgcaaataactatggtt |
100 |
Q |
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| T |
985107 |
tagagatgccaaatatggcgaccaaattggtttttgttgtctctaatttccatagttgtttcactctctttagtagttacaaatgcaaataactatggtt |
985008 |
T |
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| Q |
101 |
gctaaggttataaattgttgttgttaccagaaatattgagtaagttagtggttagaaattaannnnnnnaggaaagtagttagaagttagtttctcaatt |
200 |
Q |
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| T |
985007 |
gctaaggttataaattgttgttgttaccagaaatattgagtaagttagtggttagaaattaatttttttaggaaagtagttagaagttagtttctcaatt |
984908 |
T |
|
| Q |
201 |
tgtatgtaaaaattgagttctataaacatgaaaattatttacacaactcacattttataccaaataatcaacatgaactctaatgagttttttctctatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
984907 |
tgtatgtaaaaattgagttctataaacatgaaaattatgtacacaactcacatcttataccaaataatcaacatgaactctaatgagttttttctctatc |
984808 |
T |
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| Q |
301 |
aag--ctcaagtttaatttacctatg |
324 |
Q |
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||| ||||||||||||||||||||| |
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| T |
984807 |
aagctctcaagtttaatttacctatg |
984782 |
T |
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