View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6008_low_8 (Length: 270)
Name: NF6008_low_8
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6008_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31626024 - 31625777
Alignment:
| Q |
1 |
agagaaaggttggccatttttgcgagacatgtgaggaggagtttgagtcaaggaataaattacataaacatcttagcgattatgggcgcatgcagcaatg |
100 |
Q |
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| T |
31626024 |
agagaaaggttggccatttttgcgagacatgtgaggaggagtttgagtcaaggaataaattacataaacatcttagcgattatgggcgcatgcagcaatg |
31625925 |
T |
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| Q |
101 |
acaattcgataaggaaaatacggtaatgatcaattattatacatgttagacaatgcttgtttcaagaattaggctatcagttcattgtggttttgtgggg |
200 |
Q |
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| T |
31625924 |
acaattcgataaggaaaatacggtaatgatcaattattatacatgttagacaatgcttgtttcaagaattaggctatcagttcattgtggttttgtgggg |
31625825 |
T |
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| Q |
201 |
tatgtgttttttaggtggtgannnnnnngggtgtttacatgtgcttaac |
249 |
Q |
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| T |
31625824 |
tatgtgtttttta-gtggtgatttttttgggtgtttacatgtgcttaac |
31625777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 45508653 - 45508572
Alignment:
| Q |
51 |
aggaataaattacataaacatcttagcgattatgggcgcatgcagcaatgacaattcgataaggaaaatacggtaatgatcaat |
134 |
Q |
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| T |
45508653 |
aggaataagttacataaacatctgagcgactctgggc--atgcagcaatgaaaagtcgataaggaaaatacagtaaggatcaat |
45508572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45508805 - 45508753
Alignment:
| Q |
1 |
agagaaaggttggccatttttgcgagacatgtgaggaggagtttgagtcaagg |
53 |
Q |
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| T |
45508805 |
agagaaatcttggtcatttttgcgagacatgtgaggaggagtttgagtcaagg |
45508753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 38531547 - 38531591
Alignment:
| Q |
154 |
tgcttgtttcaagaattaggctatcagttcattgtggttttgtgg |
198 |
Q |
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| T |
38531547 |
tgcttgtttcaagaattgggctatcagttcattgtggttttgtgg |
38531591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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