View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6008_low_9 (Length: 266)

Name: NF6008_low_9
Description: NF6008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6008_low_9
NF6008_low_9
[»] chr3 (20 HSPs)
chr3 (1-194)||(47774016-47774209)
chr3 (161-197)||(7867749-7867785)
chr3 (163-197)||(21005202-21005236)
chr3 (159-197)||(37585425-37585463)
chr3 (159-197)||(45528980-45529018)
chr3 (164-197)||(2482712-2482745)
chr3 (164-197)||(45205288-45205321)
chr3 (162-195)||(51465942-51465975)
chr3 (161-197)||(3281742-3281778)
chr3 (161-197)||(8254024-8254060)
chr3 (162-190)||(20549430-20549458)
chr3 (161-197)||(21196121-21196157)
chr3 (161-197)||(35376589-35376625)
chr3 (161-197)||(39671136-39671172)
chr3 (161-197)||(46019459-46019495)
chr3 (161-197)||(49196693-49196729)
chr3 (161-197)||(49761316-49761352)
chr3 (161-197)||(50559250-50559286)
chr3 (161-197)||(53932429-53932465)
chr3 (161-197)||(54694151-54694187)
[»] chr1 (19 HSPs)
chr1 (161-197)||(7078538-7078574)
chr1 (161-197)||(18610770-18610806)
chr1 (162-197)||(11097922-11097957)
chr1 (162-197)||(26547232-26547267)
chr1 (159-197)||(24673064-24673102)
chr1 (168-197)||(3977559-3977588)
chr1 (161-197)||(902635-902671)
chr1 (161-197)||(8200084-8200120)
chr1 (161-197)||(8934634-8934670)
chr1 (161-197)||(9011642-9011678)
chr1 (165-197)||(9882697-9882729)
chr1 (161-197)||(10384208-10384244)
chr1 (162-194)||(26585214-26585246)
chr1 (161-197)||(29632431-29632467)
chr1 (161-197)||(32915110-32915146)
chr1 (161-197)||(40596081-40596117)
chr1 (161-197)||(40612111-40612147)
chr1 (161-197)||(42256457-42256493)
chr1 (161-197)||(48325805-48325841)
[»] scaffold0016 (1 HSPs)
scaffold0016 (161-197)||(204483-204519)
[»] chr8 (14 HSPs)
chr8 (161-197)||(40380278-40380314)
chr8 (162-197)||(11223897-11223932)
chr8 (162-197)||(36497659-36497694)
chr8 (164-197)||(9985716-9985749)
chr8 (164-197)||(16613634-16613667)
chr8 (161-197)||(5277742-5277778)
chr8 (161-197)||(6004941-6004977)
chr8 (161-197)||(6991846-6991882)
chr8 (161-197)||(27630894-27630930)
chr8 (161-197)||(40413376-40413412)
chr8 (161-197)||(41541866-41541902)
chr8 (161-197)||(43419876-43419912)
chr8 (161-197)||(44380652-44380688)
chr8 (165-197)||(45108695-45108727)
[»] chr7 (10 HSPs)
chr7 (161-197)||(3937148-3937184)
chr7 (161-197)||(21822637-21822673)
chr7 (163-197)||(33224834-33224868)
chr7 (164-197)||(37832450-37832483)
chr7 (164-197)||(42663084-42663117)
chr7 (164-197)||(43573581-43573614)
chr7 (164-197)||(45607024-45607057)
chr7 (161-197)||(156020-156056)
chr7 (162-190)||(7990077-7990105)
chr7 (161-197)||(44184597-44184633)
[»] chr6 (8 HSPs)
chr6 (161-197)||(21210250-21210286)
chr6 (161-197)||(27334855-27334891)
chr6 (161-197)||(27395595-27395631)
chr6 (164-197)||(35213599-35213632)
chr6 (161-197)||(3339537-3339573)
chr6 (161-197)||(11785352-11785388)
chr6 (161-197)||(12441535-12441571)
chr6 (161-197)||(15318226-15318262)
[»] chr2 (11 HSPs)
chr2 (161-197)||(10711733-10711769)
chr2 (162-197)||(5067684-5067719)
chr2 (161-191)||(6851703-6851733)
chr2 (163-197)||(15141472-15141506)
chr2 (160-194)||(34139079-34139113)
chr2 (161-190)||(18423806-18423835)
chr2 (161-197)||(6646832-6646868)
chr2 (161-197)||(18531598-18531634)
chr2 (161-197)||(29711976-29712012)
chr2 (161-197)||(30977886-30977922)
chr2 (161-197)||(31296883-31296919)
[»] chr5 (10 HSPs)
chr5 (162-197)||(1774321-1774356)
chr5 (162-197)||(15953071-15953106)
chr5 (162-197)||(26660449-26660484)
chr5 (162-197)||(26932041-26932076)
chr5 (163-197)||(14508195-14508229)
chr5 (161-197)||(125089-125125)
chr5 (161-197)||(29803222-29803258)
chr5 (161-197)||(34428157-34428193)
chr5 (161-197)||(36572688-36572724)
chr5 (161-197)||(38500940-38500976)
[»] chr4 (16 HSPs)
chr4 (162-197)||(940297-940332)
chr4 (162-197)||(33093142-33093177)
chr4 (163-197)||(35017152-35017186)
chr4 (163-197)||(47014938-47014972)
chr4 (164-197)||(1816038-1816071)
chr4 (163-196)||(40409205-40409238)
chr4 (161-197)||(27408151-27408187)
chr4 (161-197)||(33278672-33278708)
chr4 (161-197)||(37514170-37514206)
chr4 (161-197)||(38864774-38864810)
chr4 (161-197)||(41609717-41609753)
chr4 (161-197)||(42815401-42815437)
chr4 (161-197)||(43769720-43769756)
chr4 (161-197)||(44272848-44272884)
chr4 (162-194)||(51225566-51225598)
chr4 (161-197)||(51573670-51573706)
[»] scaffold0662 (1 HSPs)
scaffold0662 (163-197)||(1077-1111)
[»] scaffold0508 (1 HSPs)
scaffold0508 (164-197)||(11574-11607)
[»] scaffold0154 (1 HSPs)
scaffold0154 (164-197)||(19729-19762)
[»] scaffold0204 (1 HSPs)
scaffold0204 (161-197)||(27336-27372)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 47774209 - 47774016
Alignment:
Q  1 ttaattaggaggctatttataagtgtaaatccgtagaacaaatgaagagatttgatggttggtgtatagagtagtgaatttgctgttaggttggttaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47774209 ttaattaggaggctatttataagtgtaaatccgtagaacaaatgaagagatttgatggttggtgtatagagtagtgaatttgctgttaggttagttaagc 47774110  T
Q  101 catgtttgtagggcccactccatttatattagctctacatccacacatttccgatatgagaaagagaaatgatatttgtacatctattttgtga 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||    
T  47774109 catgtttgtaggggccactccatttatattagctctacatccacacatttctggtatgagaaagagaaatgatatttgtacattcattttgtga 47774016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 7867785 - 7867749
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||||||||||    
T  7867785 aaagagaaatgatatttgtacaactattttgtgacaa 7867749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 21005236 - 21005202
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||| ||||||||||||||||||    
T  21005236 agagaaatgatatttgaacatctattttgtgacaa 21005202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 37585425 - 37585463
Alignment:
Q  159 agaaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  37585425 agaaagagaaattatatttgtacatctattttatgacaa 37585463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 45529018 - 45528980
Alignment:
Q  159 agaaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  45529018 agaaagagaaatgatatttgtacaactattttttgacaa 45528980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 2482745 - 2482712
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||| ||||||||||||    
T  2482745 gagaaatgatatttgtacatccattttgtgacaa 2482712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 45205288 - 45205321
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  45205288 gagaaatgatatttgtacaactattttgtgacaa 45205321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 51465975 - 51465942
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgac 195  Q
    ||||||||||||||||| ||||||||||||||||    
T  51465975 aagagaaatgatatttgaacatctattttgtgac 51465942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3281778 - 3281742
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||| |||||||||||||    
T  3281778 aaagagaaatgatatttgaacatttattttgtgacaa 3281742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 8254024 - 8254060
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  8254024 aaagagaaatgatatttgtacaaccattttgtgacaa 8254060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 20549458 - 20549430
Alignment:
Q  162 aagagaaatgatatttgtacatctatttt 190  Q
    |||||||||||||||||||||||||||||    
T  20549458 aagagaaatgatatttgtacatctatttt 20549430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21196121 - 21196157
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  21196121 aaagagaaatgatatttgaacatccattttgtgacaa 21196157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 35376625 - 35376589
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  35376625 aaagagaaatgatatttgtacaaccattttgtgacaa 35376589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 39671172 - 39671136
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||| |||||||    
T  39671172 aaagagaaatgatatttgaacatctatttagtgacaa 39671136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 46019459 - 46019495
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||||| |||||    
T  46019459 aaagagaaatgatatttgaacatctattttgcgacaa 46019495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 49196693 - 49196729
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  49196693 aaagagaaatgatatttgtacaaccattttgtgacaa 49196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 49761316 - 49761352
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  49761316 aaagagaaatgatatttgaacatccattttgtgacaa 49761352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 50559286 - 50559250
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  50559286 aaagagaaatgatatttgtacaactattttttgacaa 50559250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 53932465 - 53932429
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  53932465 aaagagaaatgatatttgtacaaccattttgtgacaa 53932429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 54694187 - 54694151
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| | ||||||||||||||||    
T  54694187 aaagagaaatgatatttgaatatctattttgtgacaa 54694151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 7078574 - 7078538
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||||||||||||||||    
T  7078574 aaagagaaatgatatttgtacatctattttgtgacaa 7078538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 18610770 - 18610806
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||||||||||    
T  18610770 aaagagaaatgatatttgtacaactattttgtgacaa 18610806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 11097957 - 11097922
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11097957 aagagaaatgatatttgtacatccattttgtgacaa 11097922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 26547232 - 26547267
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| |||||||||||||    
T  26547232 aagagaaatgatatttgtacatatattttgtgacaa 26547267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 24673064 - 24673102
Alignment:
Q  159 agaaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  24673064 agaaagagaaatgatatttgaacatctattttatgacaa 24673102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 197
Target Start/End: Original strand, 3977559 - 3977588
Alignment:
Q  168 aatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||||||||||    
T  3977559 aatgatatttgtacatctattttgtgacaa 3977588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 902635 - 902671
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||| |||||||    
T  902635 aaagagaaatgatatttgaacatctatttagtgacaa 902671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 8200084 - 8200120
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  8200084 aaagagaaatgatatttgaacatccattttgtgacaa 8200120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 8934670 - 8934634
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  8934670 aaagagaaattatatttgtacaactattttgtgacaa 8934634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 9011642 - 9011678
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  9011642 aaagagaaatgatatttgtacaaccattttgtgacaa 9011678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 9882729 - 9882697
Alignment:
Q  165 agaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||||||||||||    
T  9882729 agaaatgatatttgtacaactattttgtgacaa 9882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 10384208 - 10384244
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  10384208 aaagagaaatgatatttgtacaactactttgtgacaa 10384244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 26585246 - 26585214
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtga 194  Q
    ||||||||||||||||||||| |||||||||||    
T  26585246 aagagaaatgatatttgtacaactattttgtga 26585214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 29632431 - 29632467
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  29632431 aaagagaaatgatatttgtacatttattttgtaacaa 29632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 32915146 - 32915110
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  32915146 aaagagaaatgatatttgaacatctattttatgacaa 32915110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 40596117 - 40596081
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  40596117 aaagagaaatgatatttgtacaaccattttgtgacaa 40596081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 40612111 - 40612147
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  40612111 aaagagaaatgatatttgtacaaccattttgtgacaa 40612147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 42256457 - 42256493
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  42256457 aaagagaaatgatatttgtacaaccattttgtgacaa 42256493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 48325841 - 48325805
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  48325841 aaagagaaatgatatttgtacaaccattttgtgacaa 48325805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 204519 - 204483
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||||||||| ||||||    
T  204519 aaagagaaatgatatttgtacatctattttctgacaa 204483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 40380278 - 40380314
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40380278 aaagagaaatgatatttgtacatctattttatgacaa 40380314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 11223932 - 11223897
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11223932 aagagaaatgatatttgtacatccattttgtgacaa 11223897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 36497659 - 36497694
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36497659 aagagaaatgatatttgtacaactattttgtgacaa 36497694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 9985749 - 9985716
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||||||| ||||||    
T  9985749 gagaaatgatatttgtacatctattttatgacaa 9985716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 16613634 - 16613667
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||| ||||||||||||||||||    
T  16613634 gagaaatgatatttgaacatctattttgtgacaa 16613667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 5277778 - 5277742
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  5277778 aaagagaaatgatatttgaacatccattttgtgacaa 5277742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 6004941 - 6004977
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  6004941 aaagagaaatgatatttgtacaactactttgtgacaa 6004977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 6991882 - 6991846
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||| |||||||    
T  6991882 aaagagaaatgatatttgaacatctatttggtgacaa 6991846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27630894 - 27630930
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  27630894 aaagagaaatgatatttgtacatccattttatgacaa 27630930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 40413412 - 40413376
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||  |||||||||||||    
T  40413412 aaagagaaatgatatttgtacaattattttgtgacaa 40413376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 41541866 - 41541902
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  41541866 aaagagaaatgatatttgaacatccattttgtgacaa 41541902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 43419876 - 43419912
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  43419876 aaagagaaatgatatttgtacaactaatttgtgacaa 43419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44380688 - 44380652
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  44380688 aaagagaaatgatatttgtacaaccattttgtgacaa 44380652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 45108727 - 45108695
Alignment:
Q  165 agaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||||| ||||||    
T  45108727 agaaatgatatttgtacatctattttttgacaa 45108695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3937184 - 3937148
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3937184 aaagagaaatgatatttgaacatctattttgtgacaa 3937148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 21822673 - 21822637
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||||||||||||||||    
T  21822673 aaagagaaatgatatttgaacatctattttgtgacaa 21822637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 33224834 - 33224868
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||| ||||||||||||||||||    
T  33224834 agagaaatgatatttgaacatctattttgtgacaa 33224868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 37832450 - 37832483
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  37832450 gagaaatgatatttgtacaactattttgtgacaa 37832483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 42663084 - 42663117
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||| ||||||||||||    
T  42663084 gagaaatgatatttgtacatccattttgtgacaa 42663117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 43573614 - 43573581
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||| ||||||||||||||||||    
T  43573614 gagaaatgatatttgaacatctattttgtgacaa 43573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 45607024 - 45607057
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||    
T  45607024 gagaaatgatatttgtacatctactttgtgacaa 45607057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 156056 - 156020
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||| | ||||||||||    
T  156056 aaagagaaatgatatttgtacatccactttgtgacaa 156020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 7990077 - 7990105
Alignment:
Q  162 aagagaaatgatatttgtacatctatttt 190  Q
    |||||||||||||||||||||||||||||    
T  7990077 aagagaaatgatatttgtacatctatttt 7990105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44184633 - 44184597
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||||| |||||    
T  44184633 aaagagaaatgatatttgaacatctattttgcgacaa 44184597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21210250 - 21210286
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21210250 aaagagaaataatatttgtacatctattttgtgacaa 21210286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27334855 - 27334891
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27334855 aaagagaaatgatatttgtacaactattttgtgacaa 27334891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27395595 - 27395631
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||||||||||    
T  27395595 aaagagaaatgatatttgtacaactattttgtgacaa 27395631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 35213632 - 35213599
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||| ||||||||||||||||||    
T  35213632 gagaaatgatatttgaacatctattttgtgacaa 35213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3339573 - 3339537
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  3339573 aaagagaaatgatatttgtacaaccattttgtgacaa 3339537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 11785352 - 11785388
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  11785352 aaagagaaatgatatttgtacaaccattttgtgacaa 11785388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 12441535 - 12441571
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12441535 aaagagaaatgatatttgtacaactactttgtgacaa 12441571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 15318262 - 15318226
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  15318262 aaagagaaatgatatttgaacatccattttgtgacaa 15318226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 10711733 - 10711769
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10711733 aaagagaaatgatatttgaacatctattttgtgacaa 10711769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 5067719 - 5067684
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5067719 aagagaaatgatatttgtacatctactttgtgacaa 5067684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 191
Target Start/End: Complemental strand, 6851733 - 6851703
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttg 191  Q
    |||||||||||||||||||||||||||||||    
T  6851733 aaagagaaatgatatttgtacatctattttg 6851703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 15141472 - 15141506
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||||||| ||||||    
T  15141472 agagaaatgatatttgtacatctattttatgacaa 15141506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 34139113 - 34139079
Alignment:
Q  160 gaaagagaaatgatatttgtacatctattttgtga 194  Q
    ||||||||||||||||||||||||||| |||||||    
T  34139113 gaaagagaaatgatatttgtacatctactttgtga 34139079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 18423835 - 18423806
Alignment:
Q  161 aaagagaaatgatatttgtacatctatttt 190  Q
    ||||||||||||||||||||||||||||||    
T  18423835 aaagagaaatgatatttgtacatctatttt 18423806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 6646832 - 6646868
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  6646832 aaagagaaatgatatttgaacatccattttgtgacaa 6646868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 18531598 - 18531634
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  18531598 aaagagaaatgatatttgtacaactattttttgacaa 18531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 29711976 - 29712012
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29711976 aaagagaaatgatatttgaacatccattttgtgacaa 29712012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30977886 - 30977922
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  30977886 aaagagaaatgatatttgaacatccattttgtgacaa 30977922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 31296919 - 31296883
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  31296919 aaagagaaatgatatttgtacaaccattttgtgacaa 31296883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 1774356 - 1774321
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||||| ||||||||||    
T  1774356 aagagaaatgatatttgtacatctactttgtgacaa 1774321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 15953106 - 15953071
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||| ||||||||||||||||||    
T  15953106 aagagaaatgatatttgaacatctattttgtgacaa 15953071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 26660484 - 26660449
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26660484 aagagaaatgatatttgtacatccattttgtgacaa 26660449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 26932076 - 26932041
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26932076 aagagaaatgatatttgtacatccattttgtgacaa 26932041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 14508229 - 14508195
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  14508229 agagaaatgatatttgtacaactattttgtgacaa 14508195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 125089 - 125125
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  125089 aaagagaaatgatatttgtacaactactttgtgacaa 125125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 29803222 - 29803258
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  29803222 aaagagaaatgatatttgtacaactattttttgacaa 29803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 34428157 - 34428193
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  34428157 aaagagaaatgatatttgtacaactattttttgacaa 34428193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 36572688 - 36572724
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| | ||||||||||||||    
T  36572688 aaagagaaatgatatttgtataactattttgtgacaa 36572724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 38500940 - 38500976
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| | ||||||||||||    
T  38500940 aaagagaaatgatatttgtacaaccattttgtgacaa 38500976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 940332 - 940297
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||| ||||||||||||||    
T  940332 aagagaaatgatatttgtacaactattttgtgacaa 940297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 33093177 - 33093142
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33093177 aagagaaatgatatttgtacaactattttgtgacaa 33093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 35017152 - 35017186
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  35017152 agagaaatgatatttgtacaactattttgtgacaa 35017186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 47014938 - 47014972
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  47014938 agagaaatgatatttgtacaactattttgtgacaa 47014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 1816071 - 1816038
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||| ||||||||||||||||||    
T  1816071 gagaaatgatatttgaacatctattttgtgacaa 1816038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 40409238 - 40409205
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgaca 196  Q
    |||||||||||||||||||||||| |||||||||    
T  40409238 agagaaatgatatttgtacatctactttgtgaca 40409205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27408151 - 27408187
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| |||||||||||| |||||    
T  27408151 aaagagaaatgatatttgaacatctattttgcgacaa 27408187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 33278672 - 33278708
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  33278672 aaagagaaatgatatttgaacaactattttgtgacaa 33278708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 37514206 - 37514170
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  37514206 aaagagaaatgatatttgtacatccattttgtaacaa 37514170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 38864810 - 38864774
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||  |||||||||||||    
T  38864810 aaagagaaatgatatttgtacaattattttgtgacaa 38864774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 41609753 - 41609717
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  41609753 aaagagaaatgatatttgtacatccattttatgacaa 41609717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 42815401 - 42815437
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  42815401 aaagagaaatgatatttgtacaactattttgtaacaa 42815437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 43769720 - 43769756
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  43769720 aaagagaaatgatatttgaacatccattttgtgacaa 43769756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44272884 - 44272848
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  44272884 aaagagaaatgatatttgtacaactattttttgacaa 44272848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 51225598 - 51225566
Alignment:
Q  162 aagagaaatgatatttgtacatctattttgtga 194  Q
    ||||||||||||||||| |||||||||||||||    
T  51225598 aagagaaatgatatttgaacatctattttgtga 51225566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 51573706 - 51573670
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  51573706 aaagagaaatgatatttgaacatccattttgtgacaa 51573670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 1077 - 1111
Alignment:
Q  163 agagaaatgatatttgtacatctattttgtgacaa 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  1077 agagaaatgatatttgtacaactattttgtgacaa 1111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 11607 - 11574
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||||||| ||||||||||    
T  11607 gagaaatgatatttgtacatctactttgtgacaa 11574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 19762 - 19729
Alignment:
Q  164 gagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  19762 gagaaatgatatttgtacaactattttgtgacaa 19729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27336 - 27372
Alignment:
Q  161 aaagagaaatgatatttgtacatctattttgtgacaa 197  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  27336 aaagagaaatgatatatgtacatccattttgtgacaa 27372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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