View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_high_12 (Length: 390)
Name: NF6009_high_12
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 55179815 - 55180202
Alignment:
| Q |
11 |
aatataattagaaatacaatcttttttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagnnnnnnn |
110 |
Q |
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| T |
55179815 |
aatataattagaaatacaatcttttttgtgaatgcaaataaaaatatatttattactgaaattgaatattttttattacaatgaaagtgagagaaaaaaa |
55179914 |
T |
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| Q |
111 |
ngcacgtacagatgctaatgcgtgttttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcag |
210 |
Q |
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| T |
55179915 |
agcacgtacagatgctaatgcgtgttttctatttaggatcaattattgtgacaataaatcattagcatgcaattgcaattcaatatgcaggagcatgcag |
55180014 |
T |
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| Q |
211 |
taatgctcctttgattccaaattaatgagagatatgtccattcatttcttctttc------atattaatatgcaagacacttcatggattagtga--tta |
302 |
Q |
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| T |
55180015 |
taatgctcctttgattccaaattaacgagagatatgtccattcatttcttctttcatattaatattaatatgcaagacacttcatggattagtgatttta |
55180114 |
T |
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| Q |
303 |
ctttgatgttctttgcaatcccaattttcacagcaaggttgtttttgtgcgtgtggtactaaaaatagattgattgaggaattgttat |
390 |
Q |
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| T |
55180115 |
ctttgatgttctttgcaatcccaattttcacagcaaggttgtttttgtgcgtgtggtactaaaaatagattgattgaggaattgttat |
55180202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 390
Target Start/End: Original strand, 55171913 - 55172018
Alignment:
| Q |
284 |
cttcatggattagtgattactttgatgttctttgcaatcccaattttcacagcaaggttgtttttgtgcgtgtggtactaaaaatagattgattgaggaa |
383 |
Q |
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| T |
55171913 |
cttcatggattggtgaatactttgaagttctttgcaatcc-aattttcgtagcaaggttgttttcgtgtgtgtggtactaaaaatagattgattgaagta |
55172011 |
T |
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| Q |
384 |
ttgttat |
390 |
Q |
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| T |
55172012 |
ttgttat |
55172018 |
T |
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