View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_high_20 (Length: 296)
Name: NF6009_high_20
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 45455919 - 45455655
Alignment:
| Q |
24 |
actctgacacatgcctattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaat |
123 |
Q |
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| T |
45455919 |
actctgacataggccaattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcaaaaaaattaaaat |
45455820 |
T |
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| Q |
124 |
aaagttggaaatttgggatgcttaggctgagagaaattgtttttcttggttcatgtatatatttcttattagttttatttgtcttcccttgaatcctctc |
223 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45455819 |
aaagttggaaacttgggatgcttaggctgagagaaattgtttttcttggttcatgtatatatttcttattagttttatttgtcttcccttgaatcctctc |
45455720 |
T |
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| Q |
224 |
caaactttgccttctttttcttctgtgtg---------tgcaaatattcatctccatattgttta |
279 |
Q |
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| T |
45455719 |
caaactttgccttctttttcttctgtgtgtttcatatctgcaaatattcatctccatattgttta |
45455655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 43 - 283
Target Start/End: Original strand, 40165337 - 40165586
Alignment:
| Q |
43 |
ccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaataaagttggaaatttgggat |
142 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |
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| T |
40165337 |
ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgttatttttcttaaaaattaaaataaagttggaaagttgggat |
40165436 |
T |
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| Q |
143 |
gcttaggctgagagaaattgtttttcttggttcatgtatatatttcttattagttttatttgtcttcccttgaatcctctccaaactttgccttcttttt |
242 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
40165437 |
gcttaggctgagagaaactgtttttcttggttcatgtaaatattacttattagttttatttgtcttccttagaatcctctctaaactttgccttcttttt |
40165536 |
T |
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| Q |
243 |
cttctgtgtg---------tgcaaatattcatctccatattgtttactct |
283 |
Q |
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| T |
40165537 |
cttctgtgtgtttcatatctgcaaatattcatctccatattgtttactct |
40165586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 40165206 - 40165250
Alignment:
| Q |
44 |
catgatcattgattgttgtcaacaacatgagaatcatttaagatt |
88 |
Q |
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||||||| ||||||| |||||| |||||||| ||||||||||||| |
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| T |
40165206 |
catgatccttgattgctgtcaaaaacatgaggatcatttaagatt |
40165250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 7827137 - 7827074
Alignment:
| Q |
190 |
tattagttttatttgtcttcccttgaatcctctccaaactttgccttctttttcttctgtgtgt |
253 |
Q |
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| T |
7827137 |
tattagttttatttgtcttcctttgaatcctctctaaactttgccttctttttcttctgtgtgt |
7827074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
| Q |
38 |
ctattccatgatcattgattgttgtcaacaacatgagaatcatttaagatt |
88 |
Q |
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||||||||||||| |||||||||| ||||||| |||| |||| |||||||| |
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| T |
7827204 |
ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt |
7827154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 6922175 - 6922216
Alignment:
| Q |
24 |
actctgacacatgcctattccatgatcattgattgttgtcaa |
65 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6922175 |
actctgacacatgcatattccatgatcattgattgttgtcaa |
6922216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 38237703 - 38237662
Alignment:
| Q |
24 |
actctgacacatgcctattccatgatcattgattgttgtcaa |
65 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38237703 |
actctgacacatgcttattccatgatcattgattgttgtcaa |
38237662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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