View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_high_25 (Length: 279)
Name: NF6009_high_25
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 13511614 - 13511410
Alignment:
| Q |
3 |
ggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtccttt |
102 |
Q |
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| T |
13511614 |
ggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtccttt |
13511515 |
T |
|
| Q |
103 |
agattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgat |
201 |
Q |
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| T |
13511514 |
agattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgat |
13511415 |
T |
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| Q |
202 |
tattg |
206 |
Q |
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||||| |
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| T |
13511414 |
tattg |
13511410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 13601145 - 13600941
Alignment:
| Q |
3 |
ggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtccttt |
102 |
Q |
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| T |
13601145 |
ggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtccttt |
13601046 |
T |
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| Q |
103 |
agattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgat |
201 |
Q |
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| T |
13601045 |
agattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgtgat |
13600946 |
T |
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| Q |
202 |
tattg |
206 |
Q |
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||||| |
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| T |
13600945 |
tattg |
13600941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 16798926 - 16798835
Alignment:
| Q |
114 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
204 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16798926 |
attatcgcggcccaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactctgattat |
16798835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 16840277 - 16840186
Alignment:
| Q |
114 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
204 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
16840277 |
attatcgcggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgattctgattat |
16840186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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