View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6009_high_29 (Length: 249)
Name: NF6009_high_29
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 55172220 - 55172115
Alignment:
| Q |
59 |
tagattatcaatacattatgagaactacagattatagcttttacttcctcatacaggttaaggaaatcagattcctcctgtgattattctttcctctacc |
158 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||| || |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
55172220 |
tagattatcaatacattatgtggactatatatttgagtttttacttcctcatacaggttaaggaaatcgaattccgcccgtgattattctttcctctacc |
55172121 |
T |
|
| Q |
159 |
ataaat |
164 |
Q |
| |
|
|||||| |
|
|
| T |
55172120 |
ataaat |
55172115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 55154100 - 55154008
Alignment:
| Q |
127 |
agattcctcctgtgattattctttcctctaccataaatgaaagtaaaact--ctatgatatcataagtctgctttttaacatcaaaatacagg |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
55154100 |
agattcctcctatgattattctttcctctaccataaatgaaagtaaaaaaaactctgatatcataagtcagctttttaacatcaaaattcagg |
55154008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University