View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6009_high_6 (Length: 523)
Name: NF6009_high_6
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 41104065 - 41103558
Alignment:
| Q |
1 |
caaaacaaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41104065 |
caaaacaaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccatt |
41103966 |
T |
|
| Q |
101 |
ctaattctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103965 |
ctaattctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattc |
41103866 |
T |
|
| Q |
201 |
cacctccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103865 |
cacctccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccga |
41103766 |
T |
|
| Q |
301 |
tttgactctgaatcgatctctgttcgttcttccactgatcgtcggagtagttcttctgacgaggaattctctgacgacgacggctcatcactcgcagcag |
400 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41103765 |
ttcgactctgaatcgatctcttttcgttcttccactgatcgtcggagtagttcttctgacgaggaattctccgacgacgacggctcatcactcgcagcag |
41103666 |
T |
|
| Q |
401 |
actcagtatctatgtctgctgttgctgatttgaaagctattgcagagtgtatgattttcaccggttacagtaaagaatgtgtgaatatttacttaatcgt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41103665 |
actcagtatctatgtctgctgttgctgatttgaaagctattgcagagtgtatgattttcaccggttacagtaaagaatgtgtgaatatttacttaatcgt |
41103566 |
T |
|
| Q |
501 |
gagaaaat |
508 |
Q |
| |
|
|||||||| |
|
|
| T |
41103565 |
gagaaaat |
41103558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University