View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_high_7 (Length: 517)
Name: NF6009_high_7
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 4123973 - 4123486
Alignment:
| Q |
19 |
tgtgagtggtgatgacaagtataatgatgctgttagggagattttgaaaccgaaagttgggtatggtttggcttcggagttgaggagagcgggtgtgttt |
118 |
Q |
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| T |
4123973 |
tgtgagtggtgatgacaagtataatgatgctgttagggagattttgaaaccgaaagttgggtatggtttggcttcggagttgaggagagcgggggtgttt |
4123874 |
T |
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| Q |
119 |
gtgaagactgtggaggataaaccacaggctgctgattgggctttgaagaagcagatgatgcattctatgagtagagggattgattggttgtttttggttt |
218 |
Q |
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| T |
4123873 |
gtgaagactgtggaggataaaccacaggctgctgattgggctttgaagaagcagatgatgcactctatgagtagagggattgattggttgtttttggttt |
4123774 |
T |
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| Q |
219 |
ccgatgattccgattttagtgagatgttgaggaaggctagagaggctaatttaggtactgttgttgttggggatgttgatagggctttagggaggcatgc |
318 |
Q |
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| T |
4123773 |
ccgatgattccgattttagtgagatgttgaggaaggctagagaggctaatttaggtactgttgttgttggggatgttgatagggctttagggaggcatgc |
4123674 |
T |
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| Q |
319 |
tgatttgtgggtgccgtggaatgctgttgagaatggtgaggttatggatatggatttgattcctaggaatagagatagaagaagaacaaattcaacatcg |
418 |
Q |
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| T |
4123673 |
tgatttgtgggtgccgtggaatgctgttgagaatggtgaggttatggatatggatttgattcctaggaatagagatagaagaagaacaaattcaacatcc |
4123574 |
T |
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| Q |
419 |
acaacaatggatgattttggtgatgttttgttttttcacgagggcgaggaaatggaagacgattttatgttggagtatagtgatgatg |
506 |
Q |
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| T |
4123573 |
acaacaatggatgattttggtgatgtgttgttttttcacgagggcgaggaaatggaagacgattttatgttggagtatagtgatgatg |
4123486 |
T |
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