View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_1 (Length: 871)
Name: NF6009_low_1
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 784; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 14 - 852
Target Start/End: Original strand, 39782326 - 39783165
Alignment:
| Q |
14 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782326 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
39782425 |
T |
|
| Q |
114 |
cagcccacagggatgtactacaagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaagg |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782426 |
cagcccacagggatgtactacaagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaagg |
39782525 |
T |
|
| Q |
214 |
atgtattctattaaaaatcgtgtgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctat |
313 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782526 |
atgtattctattaaaaatcgtgcgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctat |
39782625 |
T |
|
| Q |
314 |
caacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaaccta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782626 |
caacgtaactataataacaagtaacaagtcatcctaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaaccta |
39782725 |
T |
|
| Q |
414 |
ttttatttttgacgagatataatgaatgaaacaacttcgctaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcattaatcattcg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39782726 |
ttttatttttgacgagatataatgaatgaaacaacttcactaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcattaatcattcg |
39782825 |
T |
|
| Q |
514 |
actgtgaaactctttcctatgatgcaaataacattgaagttgggatgtcattgagtgaaacgattgacaatctatatttgtaacttcacaatga-tnnnn |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39782826 |
actgtgaaactctttcctatgatgcaaataacattgaagttgggatgtcattgagtgaaactattgacaatctatatttgtaacttcacaatgagaaaaa |
39782925 |
T |
|
| Q |
613 |
nnnngttataccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaa |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39782926 |
aaaagttataccaattcatgcaaggttcattgaacgttttggaactcaagtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaa |
39783025 |
T |
|
| Q |
713 |
gaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtgg |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39783026 |
gaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtgg |
39783125 |
T |
|
| Q |
813 |
cttctcaagacttaagtaacataaaagaggtaccgtggac |
852 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783126 |
cttctcaagacttaagtaacataaaagaggtaccgtggac |
39783165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 184 - 852
Target Start/End: Original strand, 39788945 - 39789617
Alignment:
| Q |
184 |
gtagtagtaacaactccctgtattaaaaggatgtattctattaaaaatcgtgtgtttctcttgcactcttaccatttcacaaaacctttatcatggtagg |
283 |
Q |
| |
|
|||||||||| ||||| | | ||||||| || |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||| |
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|
| T |
39788945 |
gtagtagtaaaaactcgccggattaaaatgaagtattctattaaaaatcgagtgtttctcttgcatacttaccatttcaaaaaacctttatcatgatagg |
39789044 |
T |
|
| Q |
284 |
tactaatagtgtc----------tactcacttctttctatcaacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttatacat |
373 |
Q |
| |
|
||||||||| || || |||||||||||||||||| ||| ||| || | ||||| |||| ||||||||||| ||||||| || |||| |
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|
| T |
39789045 |
tactaatagattcctaaataatctagtcacttctttctatcaac-taagagtaacaagtaacaacaattcatcctaacaataaaccaagtttgtaaacat |
39789143 |
T |
|
| Q |
374 |
atgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataatgaatgaaac-aacttcgctaatcgcacctaaaatttc |
472 |
Q |
| |
|
||||| |||||||||| || |||||||||||| |||||||| |||||| ||| ||||||||||||| |||| ||||||| | | ||||| ||||||| |
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|
| T |
39789144 |
atgcatgttgatatccttt--ttttgtcaatttaaacctattctattttagaccagatataatgaattaaaccaacttcgttca---cacctcaaatttc |
39789238 |
T |
|
| Q |
473 |
atccaattttttgttaagcattcctcttcattaatcattcgactgtgaaactctttcctatgatgcaaataacattgaagtt--gggatgtcattgagtg |
570 |
Q |
| |
|
||| | |||| || | || || |||||| || ||| ||||||||| ||||| ||||||||||||||| || || || ||| ||||| ||| || |
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|
| T |
39789239 |
atcggaaatttttttgtg--ttgctgttcattgattatttgactgtgaagctcttccctatgatgcaaatagcactgtgattaagggttgtcaatgactg |
39789336 |
T |
|
| Q |
571 |
aaacgattgacaatctatatttgtaacttcacaatgatnnnnnnnngttataccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtc |
670 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39789337 |
aaactattgacagtctatatttgtaacttcacaatgataaaataat-ttatgccgattcatgcaaggttcattgaacgttttggaactcatgtcatagtc |
39789435 |
T |
|
| Q |
671 |
ggggttagcatgggaggaaaggatgtgctatatgttagacaagaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacag |
770 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
39789436 |
ggggtgagcatgggaggaaaggatgtgctatacattagacaagaagatacatcagatctccatgatccagccagtatccaaaaacttttgacagaaacag |
39789535 |
T |
|
| Q |
771 |
ctagcctgaagttcatggattctgcaaatagtcatcatgtggcttctcaagacttaagtaacataaaagaggtaccgtggac |
852 |
Q |
| |
|
||||| ||||||||||||||||||| ||| |||| || ||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
39789536 |
ctagcacgaagttcatggattctgcagataatcattgcttgccttctcaagacttaattaacataaaaaaggtaccatggac |
39789617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 556 - 847
Target Start/End: Original strand, 39794046 - 39794336
Alignment:
| Q |
556 |
ggatgtcattgagtgaaacgattgacaatctatatttgtaacttcacaatgatnnnnnnnngttataccaattcatgcaaggttcattgaacgttttgga |
655 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||||||||||| ||| |
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|
| T |
39794046 |
ggatgtcattaggtgaaactattgacaatctatatttgtaacttcacaatgataaagtaat-ttatgctgattcgtgctaggttcattgaacgtttcgga |
39794144 |
T |
|
| Q |
656 |
actcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaagaagatacatcagatccccatgatccagctagtattcaaaaac |
755 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
39794145 |
actcatgtcatagttggggtgagcatgggaggaaaggatgtgctatacgttagacaagatgatacatcaaatcaccatgatccagctagtattcaaaaac |
39794244 |
T |
|
| Q |
756 |
ttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtggcttctcaagacttaagtaacataaaagaggtaccg |
847 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||||||||||||||| |||| ||||||||||| |||| ||||||| |||| |||||||| |
|
|
| T |
39794245 |
ttttgacagaaacagctaacatgaagtttatggattctgcaaataatcattgcttggcttctcaaaacttgagtaacaaaaaaaaggtaccg |
39794336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 621 - 844
Target Start/End: Original strand, 39776265 - 39776488
Alignment:
| Q |
621 |
taccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaagaagatac |
720 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
39776265 |
taccgattcatacaaggttcatagaacgttttggaactcatgtgatagtcggggtgagcatgggagggaaggatgtgttttatgttagacaagaagatac |
39776364 |
T |
|
| Q |
721 |
atcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtggcttctcaa |
820 |
Q |
| |
|
||||||| | ||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||| | |||||| || |
|
|
| T |
39776365 |
atcagatatcagtgatccaactagtatccaaaaacttttgaaggaaacagctagcatgaagttcatggattctgccgataatcagcgctcagcttctgaa |
39776464 |
T |
|
| Q |
821 |
gacttaagtaacataaaagaggta |
844 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
39776465 |
gacttaagtaacaaaaaagaggta |
39776488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 14 - 116
Target Start/End: Original strand, 39788783 - 39788883
Alignment:
| Q |
14 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
113 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39788783 |
catcatcatgggaccctgaagctttggcaaggttagaccctggaactg--catttgtttggcacatgcaatagatatgttctattattttttattagcca |
39788880 |
T |
|
| Q |
114 |
cag |
116 |
Q |
| |
|
||| |
|
|
| T |
39788881 |
cag |
39788883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 331 - 458
Target Start/End: Original strand, 39793850 - 39793976
Alignment:
| Q |
331 |
caagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgaga |
430 |
Q |
| |
|
|||||||||| |||| |||||| |||| ||||||| ||||||||||||||||| ||| | | ||| ||||||||| |||||||| |||| || || || |
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|
| T |
39793850 |
caagtaacaactcatcctaacagtaaaccaagtttatatacatatgcaagttgttattc--tttttctgtcaatttcaacctattatattctttaccagt |
39793947 |
T |
|
| Q |
431 |
tataatgaatg-aaacaacttcgctaatc |
458 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
39793948 |
tataatgaatgaaaacaacttcgttaatc |
39793976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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