View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6009_low_11 (Length: 411)
Name: NF6009_low_11
Description: NF6009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6009_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 200 - 411
Target Start/End: Complemental strand, 4010354 - 4010142
Alignment:
| Q |
200 |
aatatcttctcgaaaggctagattttgaattttt-ggaaggagctatgtgaaaatgatgttactcataatttatctatnnnnnnntatcaatttatattt |
298 |
Q |
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| T |
4010354 |
aatatcttctctaaaggctagattttgaattttttggaaggagctatgtgaaaatgatgttactcataatttatctataaaaaaatatcaatttatattt |
4010255 |
T |
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| Q |
299 |
catctagttatgcattcagagatttcaatgccttggcgattagttaatgttttgcatgtcactgttcaactttaacatgtatgtaggtagcttttgtttc |
398 |
Q |
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| T |
4010254 |
catctagttatgcattcagagatttcaatgccttggcgattagttaatgttttgcatgccactgttcaactttaacatgtatgtaggtagcttttgtttc |
4010155 |
T |
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| Q |
399 |
ccacacctttgct |
411 |
Q |
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||||||||||||| |
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| T |
4010154 |
ccacacctttgct |
4010142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 4010590 - 4010527
Alignment:
| Q |
21 |
tcctaacatggtttatgctagacattacggttaaatttgatcccacttagtgacatacggcttg |
84 |
Q |
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| T |
4010590 |
tcctaacatggtttatgctagacattacggttaaatttgatcccacttagtgacatacggcttg |
4010527 |
T |
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